Finding potential biomarkers and therapeutic target for helping multiple sclerosis patients, reference: Cell type-specific transcriptomics identifies neddylation as a novel therapeutic target in multiple sclerosis
Phase 1
Phase 2
Related docker sources: | Image name | Location |
---|---|---|
snakemake-gui-controller-image | Link |
Related docker sources: | Image name | Location |
---|---|---|
activation-score-batch-image | Link | |
deg-pipeline-batch-image | Link | |
feature-extraction-batch-image | Link |
Usage of docker container
4 images are needed to use services (notebook, pipelines, celery and redis)
We are using docker registry to distribute images, please refer to here
Docker compose option
docker-compose -f docker-compose.yaml up --build # composing up by the codes or
docker-compose -f docker-compose.example.yaml up # composing up by using the registry
Jupyter notebook container
# Access jupyter notebook
# Please use this in your browser after docker-compose up
http://localhost:8888/token_number
Pipeline container
# Please use this in your browser after docker-compose up
http://localhost/
Structure of local module Overview