Oshlack Clinker issues - Githubissues

Oshlack / Clinker

Gene Fusion Visualiser

MIT License

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issues

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Error with test

#29 as2110 opened 7 months ago
0
Unable to run ./test-installation.sh on M1 Mac

#28 Mercilena opened 1 year ago
10
Reads don't align on the fusion junction

#27 dplassard closed 1 year ago
12
custom database

#26 Zhuxitong opened 1 year ago
0
star_align failed due to global variable assignment

#25 akhileshmishra0908 opened 2 years ago
0
Supply bam or use single end reads?

#24 liscruk opened 2 years ago
2
EXITING because of INPUT ERROR: the file format of the genomeFastaFile

#23 JAYRJPT opened 3 years ago
3
test.groovy

#22 yelekley opened 3 years ago
0
Bug in Stage index_bams

#21 nadiadavidson opened 4 years ago
2
Update installation documentation

#20 nadiadavidson opened 4 years ago
0
Customizing the plot

#19 c4cactus opened 4 years ago
5
Error from test example

#18 c4cactus closed 4 years ago
3
Using Clinker with fusioncatcher output

#17 cytcc123 closed 4 years ago
8
Assign to global variable files

#16 cytcc123 closed 4 years ago
6
extract transcript sequences from clinker output

#15 maximillo opened 5 years ago
4
Plot with multi-samples

#14 maximillo opened 5 years ago
5
Clinker 1.31 not showing transcript ID's

#13 yunkaig closed 5 years ago
5
Running Clinker on single-end RNA-seq data

#12 yunkaig closed 5 years ago
6
problem running Clinker on STAR-Fusion output

#11 denisovg opened 5 years ago
8
Disable red lines in pdf plots

#10 messersc opened 5 years ago
2
fastq naming scheme is hard-coded

#9 messersc opened 5 years ago
1
Streamline installation process

#8 messersc opened 5 years ago
3
Start out with full fastq?

#7 messersc closed 5 years ago
1
Using Clinker with Pizzly output

#6 skanwal opened 5 years ago
69
transcript.gtf not created

#5 MrsLaviniaG closed 6 years ago
7
Matrix dimension error during plotting stage

#4 pwaltman closed 6 years ago
3
File name globbing weirdness

#3 lachlansimpson closed 6 years ago
2
can't find <wrong_path>/fusion/main.py

#2 lachlansimpson closed 7 years ago
3
bpipe error when running on test

#1 lachlansimpson closed 7 years ago
38