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PIFSCstockassessments
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AmSam-Bottomfish-2023
Stock assessment of BMUS for American Samoa, scheduled for 2023.
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Run full jitter analysis
#59
marcnadon
closed
1 year ago
1
Something is going with retrospective analyses for certain species
#58
marcnadon
closed
1 year ago
4
Filter for minimum sample size for length data seems off
#57
marcnadon
closed
1 year ago
1
Use +/- 1 SD for Linf alternate models
#56
marcnadon
closed
1 year ago
3
LERU mean length fit
#55
marcnadon
closed
1 year ago
4
Fix the issue with projections for VALO
#54
marcnadon
closed
1 year ago
0
Projections for LUKA
#53
marcnadon
closed
1 year ago
1
Fix the mean length graph uncertainty
#52
marcnadon
closed
1 year ago
1
Double check the nominal CPUE calculations
#51
marcnadon
closed
1 year ago
1
Create script for alternate model runs
#50
marcnadon
closed
1 year ago
2
correct variable?
#49
MOshima-PIFSC
closed
1 year ago
1
Run jitters for all species (50 model runs) to check for red flags
#48
marcnadon
closed
1 year ago
5
Hindcasting for mean length
#47
marcnadon
closed
1 year ago
2
SSBmsst correction
#46
marcnadon
closed
1 year ago
1
Alternate model plots
#45
marcnadon
closed
1 year ago
4
Forecast should use the same 10 bootstrap model runs as for the main results
#44
marcnadon
closed
1 year ago
5
Create a workflow plot that shows our data processing steps
#43
marcnadon
closed
1 year ago
3
Re-run all data scripts and SS models, update report doc
#42
marcnadon
closed
1 year ago
0
Option to run SS models from excel spreadsheets
#41
marcnadon
closed
1 year ago
8
Test 100 jitters for one species
#40
marcnadon
closed
2 years ago
2
Create release version
#39
MOshima-PIFSC
closed
1 year ago
1
Have projections run without re-fitting every SS models
#38
marcnadon
closed
2 years ago
4
Hermaphrodites
#37
marcnadon
closed
1 year ago
0
Test reproducibility of the data and SS scripts (set.seed)
#36
marcnadon
closed
2 years ago
3
Standardize_CPUE2 function
#35
MOshima-PIFSC
closed
2 years ago
1
TOT_EST_LBS missing in CPUE prep dataframe
#34
MOshima-PIFSC
closed
2 years ago
1
Remove rplot.pdf being generated in main directory
#33
marcnadon
closed
2 years ago
1
Major reorg
#32
marcnadon
closed
2 years ago
0
New boot forecast
#31
marcnadon
closed
2 years ago
0
Bootstrap MVLN output missing 1967-1968
#30
marcnadon
closed
2 years ago
2
Projections
#29
marcnadon
closed
2 years ago
2
Fix the Runs test / fit plots
#28
marcnadon
closed
2 years ago
0
How to get the mean length CIs when using the Dirichlet
#27
marcnadon
closed
2 years ago
1
Have option for superyears
#26
marcnadon
closed
2 years ago
3
Turn CPUE data completely off
#25
marcnadon
closed
2 years ago
0
Point SS inputs for catch and size differently
#24
marcnadon
closed
2 years ago
2
Check into issue with retrospective plot bug
#23
marcnadon
closed
2 years ago
0
Add option for time-varying selectivity for historical catch
#22
marcnadon
closed
2 years ago
2
Email Piner area-as-fleet Lambda weighting
#21
marcnadon
closed
2 years ago
4
Check with SS folks regarding low Fmsy gradient warning
#20
marcnadon
closed
2 years ago
4
Initial F estimation
#19
marcnadon
closed
2 years ago
1
Add "Input Variance adjustment factors" to R script for SS
#18
marcnadon
closed
2 years ago
1
Add fleet-specific likelihood profile graph
#17
marcnadon
closed
2 years ago
1
Integrate full diagnostics in the build_all_ss function
#16
marcnadon
closed
2 years ago
1
Early vs recent rec devs
#15
marcnadon
closed
2 years ago
1
Add second CPUE
#14
marcnadon
closed
2 years ago
1
Add a function to simplify running diagnostics
#13
marcnadon
closed
2 years ago
2
Is it possible to split the life history options some more?
#12
marcnadon
closed
2 years ago
1
Run a base case model for APVI
#11
marcnadon
closed
2 years ago
1
Investigate the historic catch
#10
marcnadon
closed
2 years ago
1
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