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PayamDiba
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SERGIO
A simulator for single-cell expression data guided by gene regulatory networks
GNU General Public License v3.0
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pypi usage
#25
nlapier2
opened
5 months ago
0
16 numpy deprecation
#24
augeorge
closed
6 months ago
0
Feedback regulations within the GRN
#23
ysjzuibang
closed
1 year ago
0
import from networkx graph and correct bug for grn_from_human
#22
g-torr
opened
1 year ago
0
Jz parse dagitty
#21
djinnome
opened
1 year ago
0
Noise parameters in publication
#20
fkgruber
opened
1 year ago
2
How to simulate knock-downs?
#19
fkgruber
opened
1 year ago
2
Justification for single GRN across cell types
#18
fkgruber
opened
1 year ago
0
ROC calculation in figure 4 of paper.
#17
fkgruber
opened
1 year ago
3
how to simulate multiple "patients"/cell-lines
#16
fkgruber
opened
1 year ago
2
GRN reconstruction datasets in Cell Syst . 2020
#15
shhuang1
opened
2 years ago
0
Cannot generate data with cluster structure
#14
PeterZZQ
opened
2 years ago
14
PyScenic Guidance
#13
roivant-matts
opened
3 years ago
3
600 Gene, 6 Cell Types Dataset?
#12
aradley
opened
3 years ago
3
Input master regulator expression data?
#11
jonathandesmedt92
opened
3 years ago
2
Advice on creating a new GRN
#10
aradley
closed
3 years ago
12
Error: Inconsistent number of bins
#9
lila167
closed
3 years ago
1
Error in dynamic simulation
#8
dosorio
closed
3 years ago
2
Memory request?
#7
XinWang19
opened
4 years ago
4
parameterizing the GRN
#6
rlittman16
opened
4 years ago
1
Where to get my own GRN as input?
#5
qianxu05172019
closed
4 years ago
2
error when running run_sergio.ipynb
#4
PeterZZQ
closed
4 years ago
9
Possible typo in argument build_graph()
#3
AJnsm
closed
4 years ago
1
Importing sergio in demo
#2
agitter
closed
4 years ago
1
Error running run_sergio.ipynb
#1
satabdisaha1288
closed
4 years ago
1