PennTURBO semantic-engine issues

PennTURBO / semantic-engine

TURBO semantic engine (Drivetrain). Transforms source-dependent RDF data into a source-independent, semantically rich RDF model.

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semantic engine cleanup tasks

#78 hjwilli opened 3 years ago
2
Context index guidance

#77 turbomam opened 3 years ago
1
SBT Error: “Failed to construct terminal; falling back to unsupported…”

#76 turbomam opened 3 years ago
1
Hayden branch

#75 greenguy33 closed 3 years ago
0
Drivetrain Automated Test Generation - How to Use and Ideas for Improvement

#74 greenguy33 closed 4 years ago
0
Patient roles instantiated without types for post_icbo_synthea_omop_cnp_transformation_instructions.ttl

#73 turbomam closed 4 years ago
1
Edits to acornOntology.ttl and turbo_valid_graph_specification.ttl for the sake of post_icbo_synthea_omop_cnp_transformation_instructions.ttl

#72 turbomam closed 4 years ago
2
Archive some Drivetrain folders?

#71 turbomam opened 4 years ago
0
assertion failed in Mark's latest run all

#70 turbomam closed 4 years ago
1
data item part-hood shouldn't use OMOP specific terms in the valid graph specification

#69 turbomam opened 4 years ago
2
Rename graphModelFile property

#68 turbomam closed 4 years ago
1
Handoff time: Acorn file edits

#67 turbomam closed 4 years ago
1
Recipes don't exist, they are executed

#66 turbomam closed 4 years ago
1
There are racial identity datums that are parts of encounters

#65 turbomam opened 4 years ago
0
Acorn: custom named graphs not working properly within Optional Blocks

#64 greenguy33 closed 4 years ago
1
Acorn: named graphs not required to be defined as TurboNamedGraph

#63 greenguy33 opened 4 years ago
0
New recipe class names

#62 turbomam closed 4 years ago
0
Get Synthea OMOP measurement instantiation compatible with subClassOf* measurement datum

#61 turbomam closed 4 years ago
2
Conditional hasRequiredInput (vs partial instantiation)?

#60 turbomam closed 4 years ago
6
URI base for properties: prefix?

#59 turbomam closed 4 years ago
1
Current Acorn measurement unit label query never finishes

#58 turbomam closed 4 years ago
4
What drivetrain class "documents" Acorn classes and predicates?

#57 turbomam closed 4 years ago
2
LOINC base URI = http://purl.bioontology.org/ontology/LNC/

#56 turbomam closed 4 years ago
2
Study OMOP note and note_nlp tables

#55 turbomam opened 4 years ago
0
Populated by Synthea but unmodeled

#54 turbomam opened 4 years ago
1
implement "filters" with datatype literal inputs?

#53 turbomam closed 4 years ago
1
make "...in the Graph Specification is not the output of a queued process in the Instruction Set..." a warning

#52 turbomam closed 4 years ago
0
Acorn file graphs should use the drivetrain: base URI

#51 turbomam closed 4 years ago
1
How to find reusable patterns in Acorn files?

#50 turbomam closed 4 years ago
3
Consolidated mapping decision points

#49 turbomam opened 4 years ago
0
Clinical data types "missing" from Synthea and/or OMOP 5.3?

#48 turbomam opened 4 years ago
2
acorn entity naming should be general, based on the kind of data

#47 turbomam opened 4 years ago
1
procedure start/time stamp?

#46 turbomam closed 4 years ago
2
procedure "seeAlso" SNOMED, not "is about"?

#45 turbomam opened 4 years ago
0
turn Carnival graph into verbatim RDF "shortcuts"?

#44 turbomam opened 4 years ago
0
checksum for Neo4J graphs?

#43 turbomam opened 4 years ago
0
Add lock to repo during Drivetrain run

#42 turbomam opened 4 years ago
0
change the prefix and base for Acorn related URIs

#41 turbomam closed 4 years ago
0
Put all provenance data items and axioms in their own named graph?

#40 turbomam opened 4 years ago
0
procedure keys should be denoting all procedure data/provenance

#39 turbomam closed 4 years ago
1
OMOP condition_occurrence has a start and end date

#38 turbomam opened 4 years ago
1
Review row counts/instance counts esp. regarding hasRequiredInput

#37 turbomam opened 4 years ago
4
Not all drug_exposures are prescriptions per se

#36 turbomam opened 4 years ago
2
November 2019 umls2rdf

#35 turbomam opened 4 years ago
0
Redo CVX umls2rdf

#34 turbomam opened 4 years ago
1
Coarse class buckets for measurements, like procedures?

#33 turbomam opened 4 years ago
3
Two dependents in a ontologies:TurboGraphVariableManipulationLogic?

#32 turbomam closed 4 years ago
4
Can Drivetrain clear multiple production named graphs?

#31 turbomam closed 4 years ago
1
Does Drivetrain add the TURBO ontology twice?

#30 turbomam closed 4 years ago
0
Acorn start date triples should use same pattern as...

#29 turbomam closed 4 years ago
0