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Phelimb
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atlas
atlas
MIT License
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Atlas installation
#33
idolawoye
opened
5 years ago
0
Make probes dna mut rev strand
#32
Phelimb
opened
6 years ago
0
make-probes
#31
Phelimb
opened
6 years ago
0
Cleanup logging; removed mccortex quiet flag
#30
ffranr
closed
6 years ago
0
fix: windows OS finds mccortex binary in scripts current directory
#29
ffranr
closed
6 years ago
0
removed trailing forward slash from tmp directory path for windows support
#28
ffranr
closed
6 years ago
1
Update presence.py
#27
Phelimb
closed
6 years ago
0
Update presence.py
#26
Phelimb
closed
6 years ago
1
Fix formatting of shell code + tidy up
#25
tseemann
closed
6 years ago
0
Dev
#24
Phelimb
closed
7 years ago
0
Issue with database or genotype calibration
#23
iqbal-lab
opened
7 years ago
9
Walk finds allele at 600x that genotype misses
#22
ronald-jaepel
opened
7 years ago
1
Change threshold for outputting paths in `walk`
#21
Phelimb
opened
7 years ago
3
Underestimation of expected depth
#20
ronald-jaepel
opened
7 years ago
0
.
#19
Phelimb
closed
7 years ago
0
Add MCR-1/2 to panel
#18
Phelimb
opened
8 years ago
1
atlas/docs/usage/genotyping.md
#17
hcdenbakker
closed
8 years ago
3
Mccortex Path not accepted
#16
ronald-jaepel
closed
8 years ago
5
Install issue
#15
Phelimb
closed
8 years ago
2
Walk finds completely novel allele when presented with mutated allele
#14
ronald-jaepel
closed
8 years ago
3
Walk finds database allele when presented with mutated allele
#13
ronald-jaepel
closed
8 years ago
3
If there's no overlapping variants than `place` defaults to callset with smallest number of vars
#12
Phelimb
opened
8 years ago
0
Genotyping Errors
#11
ronald-jaepel
closed
8 years ago
32
Issues from Rachel
#10
Phelimb
opened
8 years ago
2
Add option for ONT error rate for genotyping
#9
Phelimb
opened
8 years ago
0
Build a sketch of every sample in your data - use this to find nearest neighbours
#8
Phelimb
opened
8 years ago
0
Defining variants independent of reference
#7
Phelimb
opened
8 years ago
1
can we remove the copyright attribution to isaac in atlas ?
#6
iqbal-lab
closed
8 years ago
1
Removing paralog kmers
#5
iqbal-lab
opened
8 years ago
1
How to get good measure of sensitivity and specificity
#4
Phelimb
opened
8 years ago
0
references should be attached to population variants
#3
Phelimb
closed
8 years ago
0
Clade defining variants should be variants found in ALL
#2
Phelimb
opened
8 years ago
0
Use Genotyped variants not called variants to build placer tree
#1
Phelimb
opened
8 years ago
0