PlantReactome production-issues issues

PlantReactome / production-issues

Tracker for Plant Reactome issues in Production, whether internally or externally reported.

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issues

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How to download BioPAX format data.

#49 yayamamo closed 9 months ago
3
Pathway hierarchy links (left-nav) not working for ABA and Ethylene biosynthesis sub-pathways? (links rolled up the hierarchy to parent pathway or even higher)

#48 preecej closed 4 years ago
1
interactors.db file on production site out of date

#47 preecej closed 5 years ago
3
Ref species O. sativa on tops of the species list

#46 jaiswalp closed 5 years ago
3
SBGN links not working

#45 elserj opened 5 years ago
1
PPT exporter not working

#44 elserj opened 5 years ago
0
Pathway diagram missing items: Reproductive meristem phase change

#43 preecej opened 5 years ago
1
Add PubChem to partners

#42 jaiswalp closed 5 years ago
1
DiagramJs example fails to load - likely CORS issue

#41 preecej closed 9 months ago
1
Header link to Release Summary incorrect

#40 preecej closed 5 years ago
1
Missing compartment labels on pathway diagrams on Prod server

#39 preecej closed 5 years ago
1
ABA Biosynthesis - missing projections

#38 preecej closed 4 years ago
5
lower Neo4j logging level on OICR servers

#37 preecej opened 5 years ago
0
IE dropdown menu selection issues

#36 preecej opened 6 years ago
2
Deprecated ChEBI ids - need to update and/or remove

#35 preecej opened 6 years ago
1
Failed email response to "no search results" page - HTTP 405

#34 preecej opened 6 years ago
1
pathway diagram corrections for 56b

#33 guptapa closed 6 years ago
2
need temp redirect for sorghum xrefs

#32 preecej closed 7 years ago
1
remove stale stats.html page

#31 preecej closed 7 years ago
1
Maize xrefs breaking due to changed v4 folder in URL

#30 preecej closed 7 years ago
1
ContentService - no top level pathways for taxonomy id 39947

#29 ajo2995 closed 7 years ago
1
get FireworksJs and DiagramJs running

#28 preecej closed 7 years ago
2
remove irrelevant test data from Analysis Tools examples, and upload Plant Reactome test data

#27 preecej closed 7 years ago
1
swap out Reactome images for Plant Reactome images

#26 preecej closed 7 years ago
2
is the BAR PSICQUIC Interactor service returning correct results?

#25 preecej closed 6 years ago
2
Header stable id link in Details panel Description tab is broken

#24 preecej closed 7 years ago
1
create simplified documentation for RESTful APIs, widgets, and bulk downloads

#23 jaiswalp closed 6 years ago
2
PeanutBase and LegumeInfo: Linking to Plant Reactome with gene model IDs

#22 jaiswalp opened 7 years ago
3
Species comparison does not work on new Prod VM

#21 preecej closed 7 years ago
1
CGI-generated pages not loading on future Prod VM

#20 preecej closed 7 years ago
2
Analysis Tools: File upload not working on new Test server (.88)

#19 preecej closed 7 years ago
2
Search index not aligned with new data.

#18 preecej closed 7 years ago
3
ATLAS expression widget not returning data for new Stable IDs

#17 preecej closed 7 years ago
2
Pathways showing up on Plantreactomedev but not on live site

#16 guptapa closed 7 years ago
1
Pathway rendering on live plantreactome site not working well

#15 guptapa closed 7 years ago
1
Search doesn't work well for protein/enzyme search

#14 guptapa closed 7 years ago
1
How does highlightPathwayDiagram API endpoint work?

#13 mycrobe closed 7 years ago
1
Structure tab in Pathway Browser Details pane is empty.

#12 preecej closed 8 years ago
4
Content updates needed in Plant reactome

#11 naithanis closed 8 years ago
10
Needs update # of projected species

#10 naithanis closed 8 years ago
4
Browser compatibility problems for FF and IE: pathway browser, species comparison tool

#9 jaiswalp closed 6 years ago
19
Missing expression for non-IRGSP rice gene

#8 jaiswalp opened 8 years ago
1
Suggestions for making non-gene product associated reactions in Projections

#7 jaiswalp opened 8 years ago
6
Atlas expression data

#6 jaiswalp closed 8 years ago
14
Search results details not displaying for At, Zm, and some Os results

#5 preecej closed 7 years ago
3
Expression overlay does not work for all projected species

#4 preecej closed 6 years ago
2
cardiolipin pathway not appearing in projections

#3 guptapa closed 8 years ago
3
Suberin pathway missing gene products (and reactions) in projections

#2 jaiswalp closed 8 years ago
5
Polar auxin transport - missing gene products (and reaction) in projections; diagram misdrawn

#1 jaiswalp closed 8 years ago
5