Planteome samara issues

Planteome / samara

extracts plant trait data from open data sources like apsnet and ars-grin

MIT License

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issues

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return exit code 1 on failing to download from aps

#62 jhpoelen closed 5 years ago
2
adding manually matched targetTaxonName for APS plant hosts

#61 jhpoelen closed 5 years ago
1
APS plant hosts names (targetTaxonNames) prefixed with DisplayTitle

#60 jhpoelen opened 5 years ago
0
scape of APS page for Kalanchoë fails

#59 jhpoelen opened 5 years ago
0
scrape of APS page for Conifers diseases fails

#58 jhpoelen opened 5 years ago
0
apsnet common disease pages no longer available via http://www.apsnet.org/publications/commonnames/Pages/default.aspx

#57 jhpoelen closed 5 years ago
6
Advanced name cleaning method: italics?!?

#56 austinmeier closed 5 years ago
15
exclude APS turf grasses page from samara

#55 jhpoelen closed 6 years ago
0
unexpected match of Erysiphe cichoracearum DC to PO:0020136

#54 jhpoelen closed 6 years ago
2
allow samara taxonMap to override subsequent taxonMaps

#53 jhpoelen closed 6 years ago
1
add host part to extracted columns from APS

#52 jhpoelen closed 6 years ago
1
replace ncbitaxon altIDs by main taxon ID

#51 marieALaporte closed 6 years ago
4
strange (incorrect) mappings of pathogens in APS

#50 austinmeier closed 6 years ago
7
ars-grin - some scraped records are missing GRINTaxon entries

#49 jhpoelen opened 6 years ago
0
http://ecoport.org - The name "EcoPort" is a composite acronym derived from the words 'Ecology and Portal'.

#48 jhpoelen opened 6 years ago
0
https://ipmdata.ipmcenters.org - Integrated Pest Management database for commodities grown in the United States

#47 jhpoelen opened 6 years ago
0
https://nematode.unl.edu/index.html - Plant and Insect parasitic nematodes at University of Nebraska-Lincoln

#46 jhpoelen opened 6 years ago
0
http://www.dpvweb.net/ - description of plant viruses DPVweb

#45 jhpoelen opened 6 years ago
0
North American Plant Protection Organization's (NAPPO) Phytosanitary Alert System

#44 jhpoelen opened 6 years ago
1
National Agricultural Pest Information System (NAPIS)

#43 jhpoelen closed 6 years ago
1
Natural Resources Canada. Canadian Forest Service. Scope: Trees, insects and diseases of Canada's forests (TIDCF)

#42 jhpoelen opened 6 years ago
0
traits available through SESTO nordgen

#41 jhpoelen opened 6 years ago
1
Millenium Seed Bank not (yet) open

#40 jhpoelen opened 6 years ago
1
Kew Garden Seed Information Database not (yet) open data

#39 jhpoelen opened 6 years ago
0
eurisco dataset includes geospatial-temporal-taxonomic information but no traits

#38 jhpoelen opened 6 years ago
6
"Fruit injury from mishandling during harvest or grading" reported as pathogen of mango Mangifera indica from aps

#37 jhpoelen opened 7 years ago
0
create scraper for article titles of APS Journal Plant Disease

#36 jhpoelen opened 7 years ago
0
apsnet name resolving : resolve suspicious name mappings

#35 jhpoelen opened 7 years ago
8
grin scraper fails on parsing descriptordetails page

#34 jhpoelen closed 7 years ago
1
grin scraper: after first connection timeout, all requests fail: throttling?

#33 jhpoelen closed 7 years ago
1
ars-grin jenkins job fails after upgrade to scala 2.12

#32 jhpoelen closed 7 years ago
4
ars-grin scrape fails on network outage

#31 jhpoelen closed 7 years ago
7
resolve locales to lat/lng pairs to facilitate geospatial analysis

#30 jhpoelen opened 8 years ago
0
possible manual transcription of apsnet turfgrasses http://www.apsnet.org/publications/commonnames/Pages/Turfgrasses.aspx

#29 jhpoelen closed 7 years ago
2
include verbatim pathogen/host names

#28 jhpoelen closed 8 years ago
1
parse failure on ars-grin

#27 jhpoelen closed 8 years ago
3
parse list of genus/species pathogens into separate interactions

#26 jhpoelen closed 8 years ago
4
remove "Genus" prefix in apsnet pathogens

#25 jhpoelen closed 8 years ago
0
Add NCBI taxon ID to APS scrape?

#24 austinmeier closed 8 years ago
2
add source citation apsnet

#23 jhpoelen closed 8 years ago
2
parse host descriptions in APSNET

#22 jhpoelen closed 8 years ago
0
expand pathogen abbreviations in APSNET

#21 jhpoelen closed 8 years ago
1
descriptor name does not match descriptor id and definition

#20 jhpoelen closed 8 years ago
1
resolve PubMed Ids for grin references

#19 jhpoelen opened 8 years ago
2
introduce grin identifiers to facilitate in term mappings

#18 jhpoelen closed 8 years ago
4
Header row has too many columns

#17 austinmeier closed 8 years ago
3
Identify evidence code for GAF2

#16 austinmeier opened 8 years ago
3
include references in grin scrape

#15 jhpoelen closed 8 years ago
2
map grin descriptor name/id to Trait Ontology terms

#14 jhpoelen opened 8 years ago
0
map grin taxa to ncbi taxa

#13 jhpoelen closed 7 years ago
4