PominovaMS denovo_benchmarks issues

PominovaMS / denovo_benchmarks

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issues

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Contranovo

#30 kai-jz opened 19 hours ago
0
Add Spectralis

#29 Chryzl opened 1 week ago
0
Add reference proteomes and script for programmatic download

#28 BioGeek opened 2 weeks ago
0
Enable run pi HelixNovo locally

#27 tingpeng17 closed 1 week ago
1
Unable to run pi-HelixNovo locally

#26 BioGeek opened 2 weeks ago
1
Fix build of pi-HelixNovo apptainer image

#25 BioGeek closed 2 weeks ago
0
Unable to build pi-HelixNovo image

#24 BioGeek closed 2 weeks ago
0
Unable to run DeepNovo locally

#23 BioGeek opened 2 weeks ago
0
Unable to run Casanovo non-tryptic model locally

#22 BioGeek opened 2 weeks ago
0
Typo fixes

#21 BioGeek closed 2 weeks ago
0
Use environment variables for file paths so that benchmark can be run locally

#20 BioGeek closed 4 days ago
2
Benchmark cannot be run locally due to hardcoded paths

#19 BioGeek closed 4 days ago
0
Update dataset names in README, sample_data and results folders

#18 BioGeek closed 2 weeks ago
0
dataset names in README, sample_data and results folders are out of date.

#17 BioGeek closed 2 weeks ago
0
Add Novor

#16 fasterliu opened 2 weeks ago
0
Add build_apptainer_images.sh script to build all apptainer images

#15 BioGeek closed 2 weeks ago
1
Add SMSNet to the benchmark

#14 sirasris opened 3 weeks ago
0
Add instructions to install required packages for running the benchmark

#13 BioGeek closed 3 weeks ago
0
container creation failed: mount hook function failure: mount overlay->/usr/local/var/apptainer/mnt/session/final error: while mounting overlay: can't mount overlay filesystem to /usr/local/var/apptainer/mnt/session/final: invalid argument

#12 BioGeek closed 3 weeks ago
1
Add PepNet

#11 lkytal closed 4 days ago
0
Add PepNet

#10 lkytal closed 3 weeks ago
0
Add biatnovo

#9 yangshu729 closed 5 days ago
1
DePS

#8 gc-js closed 5 days ago
1
Add pi-HelixNovo

#7 tingpeng17 closed 2 weeks ago
0
Formats

#6 PominovaMS closed 4 months ago
0
subsample points for precision-coverage plots

#5 PominovaMS closed 5 months ago
0
add dashborad script

#4 PominovaMS closed 5 months ago
0
Dashboard

#3 PominovaMS closed 5 months ago
0
Singularity

#2 PominovaMS closed 5 months ago
0
Add casanovo bm

#1 PominovaMS closed 6 months ago
0