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RuleWorld
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nfsim
A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
http://michaelsneddon.net/nfsim/
MIT License
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Missing a bracket in output json file
#40
kychen37
opened
3 months ago
2
Merging branch made to address seg fault in Issue 37
#39
aadibiasi
closed
4 months ago
0
nesting of if-then-else statements in global functions
#38
wshlavacek
opened
4 months ago
13
segfault on nfsim 1.14.1
#37
alubbock
closed
4 months ago
3
Issue35 - new reaction firing file format
#36
ASinanSaglam
closed
1 year ago
0
New output file for reactions
#35
ASinanSaglam
closed
1 year ago
6
Error when reconnecting internal bonds
#34
cvmbb
opened
1 year ago
1
Intramolecular bonds not being correctly written to .species file
#33
jrfaeder
opened
1 year ago
0
Rasilab cleanup output
#32
ASinanSaglam
closed
2 years ago
1
Remove reaction tagging for output and add new options to help
#31
rasi
closed
2 years ago
2
Connectivity changes
#30
ASinanSaglam
closed
3 years ago
2
Python bindings
#29
dilawar
opened
3 years ago
0
Merge connectivity inference in NFSim
#28
rasi
closed
3 years ago
0
Test case v17 generates expected error, update needed
#27
ASinanSaglam
closed
3 months ago
1
Time dep params
#26
ASinanSaglam
closed
3 years ago
1
merging c+11 changes with master branch
#25
jjtapia
opened
6 years ago
0
Ring closure bug
#24
jrfaeder
opened
6 years ago
0
There is probably a typo in src/NFreactions/reactions/DORreaction.cpp
#23
LifeWorks
opened
6 years ago
0
Operations order bug
#22
jrfaeder
opened
6 years ago
1
UTL low bug
#21
jrfaeder
opened
7 years ago
0
Can't use a Species Observable in a local function
#20
lh64
opened
8 years ago
0
clang changes
#19
jjtapia
closed
8 years ago
0
merge 1.12.1 changes
#18
jjtapia
closed
8 years ago
0
Automatic setting of the gml parameter
#17
jrfaeder
opened
8 years ago
0
Issue13
#16
jjtapia
closed
8 years ago
0
Issue13
#15
jjtapia
closed
8 years ago
0
complex with redundant bonds causing issues in time series generation
#14
jjtapia
opened
8 years ago
0
NFSim passes over the wrong subpattern for local function evaluation
#13
jjtapia
closed
8 years ago
3
Structured nfsim
#12
jjtapia
closed
8 years ago
0
Local function on Molecular scope not evaluated with -nocslf flag set
#11
msneddon
opened
8 years ago
0
XML files included for examples don't have 'TotalRate' field
#10
lh64
opened
8 years ago
0
Symmetry breaking reactions
#9
jrfaeder
opened
8 years ago
0
Issue2
#8
jjtapia
closed
8 years ago
0
Issue2
#7
jjtapia
closed
9 years ago
0
Bugfix for handling reaction-molecule mapping with complex symmetry issues
#6
jjtapia
closed
9 years ago
0
Issue2
#5
jjtapia
closed
9 years ago
0
Continuing instead of returning failure when template cannot map to o…
#4
jjtapia
closed
9 years ago
0
Pattern matching is returning wrong results when comparing symmetric components
#3
jjtapia
closed
8 years ago
0
NFSim cannot handle one molecule agent being mapped to the same reaction more than once
#2
jjtapia
closed
8 years ago
6
patch to nauty for OSX nfsim compilation
#1
jjtapia
closed
9 years ago
0