SAND-Lab MEA-NAP issues

SAND-Lab / MEA-NAP

MEA-NAP. A streamlined diagnostic and analytic tool for data obtained using microelectrode arrays.

GNU General Public License v3.0

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issues

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Filter parameters and spike dection

#54 wxc1234567891111111 closed 1 week ago
3
Not enough nodes

#53 adampavlinek opened 1 month ago
1
Error before step 2B

#52 adampavlinek closed 1 month ago
2
Sample file running error

#51 wxc1234567891111111 opened 1 month ago
5
File conversion issue

#50 adampavlinek closed 1 month ago
8
High Pass Filter Not Working for Axion Maestro MEA Data

#49 davidioluigbo closed 3 months ago
1
Merge pull request #47 from SAND-Lab/dev

#48 Timothysit closed 3 months ago
0
Merge pull request #46 from SAND-Lab/main

#47 Timothysit closed 3 months ago
0
Fixes mostly related to advanced settings

#46 Timothysit closed 3 months ago
0
Fixes moving advanced settings options to GUI mode

#45 Timothysit closed 3 months ago
0
added option specification previously in advanced settings

#44 Timothysit closed 3 months ago
0
add csv extension if not found in filename

#43 Timothysit closed 4 months ago
0
Analysis pipeline gets stuck at step 2A

#42 adampavlinek closed 3 months ago
17
Error in raw data folder input

#40 adampavlinek closed 4 months ago
2
Update guide-for-new-users.rst

#39 SAND-Group closed 5 months ago
0
Update guide-for-advanced-users.rst

#38 SAND-Group closed 6 months ago
0
Update .gitignore

#37 Timothysit closed 6 months ago
0
Licence file needed

#36 sje30 closed 6 months ago
1
updated spike alignment + faster

#35 jeremi-chabros opened 11 months ago
0
Normalisation value PL, CC, etc.

#34 hhs2 opened 11 months ago
0
Colormap settings biAdvancedSettings

#33 hhs2 closed 7 months ago
2
Rename Params.excludeEdgesBelowThreshold

#32 hhs2 closed 5 months ago
2
Global threshold applied in ExtractNetMet

#31 hhs2 opened 12 months ago
1
Update methods.rst

#30 hhs2 closed 12 months ago
0
Update methods.rst

#29 hhs2 closed 12 months ago
0
Update methods.rst

#28 hhs2 closed 12 months ago
0
Spike detection error about: Nonfinite endpoints or increment for colon operator in index.

#27 Timothysit closed 1 year ago
1
Added Params.figExt to pipeline steps

#26 davidioluigbo closed 1 year ago
0
Updated Github Documentation

#25 davidioluigbo closed 1 year ago
0
Update batchDetectSpikes.m

#24 yuanyin98 closed 1 year ago
0
Update MEApipeline.m

#23 yuanyin98 closed 1 year ago
0
(Step 1B) Blank SpikeFrequencies .png and .svg Files

#22 davidioluigbo closed 1 year ago
1
Added images to documentation

#21 davidioluigbo closed 1 year ago
0
Pipeline error at step 4B

#20 XuelinWangTvT closed 1 year ago
7
Error in Step1 Spike Detection: unable to remove grounded electrodes

#19 yuanyin98 closed 1 year ago
3
Error in Step 4A of Analysis Pipeline due to Invalid or Deleted Figure

#18 davidioluigbo closed 1 year ago
2
save figures in plotSpikeDetectionChecks

#17 yuanyin98 closed 1 year ago
2
Some network plots (step 4 of the pipeline) are not made

#16 Timothysit closed 2 years ago
1
Remove hard-coded sampling rate in `burstDetect.m`

#15 Timothysit closed 2 years ago
1
st-bin_ms*25 in ` plotSpikeDetectionChecks.m`

#14 Timothysit opened 2 years ago
0
The variable 'st' is not recognized or defined in plotSpikeDetectionChecks (line 157)

#13 davidioluigbo closed 2 years ago
1
Catching unsupported wavelet names in spike detection step

#12 Timothysit closed 2 years ago
1
Adding stationary wavelet transform (SWT) spike detection to the pipeline

#11 Timothysit closed 7 months ago
1
Clarifying what `Params.SpikesMethod` does

#10 Timothysit closed 2 years ago
1
Sampling frequency of acquisition are sometimes hard-coded

#9 Timothysit closed 2 years ago
1
[Feature request] For network plots plotting node colours by network metrics, scale the colorbar according to maximum and minimum values across batch of recording

#8 EliseChang closed 1 year ago
1
Colorbar axis incorrectly labelled in output: 4_NetworkActivity\4A_IndividualNetworkAnalysis\"Group Name"\"Lag"\3-5_MEA_NetworkPlotNode degreeBetweeness centrality/Participation coefficient/Node strengthlocal connectivity

#7 EliseChang closed 2 years ago
2
[Feature request] Add pre-post TTX spike detection comparison to network pipeline

#6 Timothysit opened 2 years ago
0
[Feature request] Allow option for AnalysisPipeline to output .csv files

#5 Timothysit closed 2 years ago
1
[Feature request] Change from reading excel files to reading csv files

#4 Timothysit closed 2 years ago
1