issues
search
SATAY-LL
/
LaanLab-SATAY-DataAnalysis
This contains codes and workflows for data analysis regarding SATAY experiments.
Apache License 2.0
4
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Convert Matlab code provided by the Kornmann lab for SATAY analysis to Python.
#14
Gregory94
closed
3 years ago
3
Publish the main documents in a Jupyter Book for easy visualization, and to enhance reproducibility of the workflow
#13
leilaicruz
closed
4 years ago
1
Try using regression models to predict transposition insertion depending on the genomic length and position
#12
leilaicruz
closed
3 years ago
2
Create visual and numerical comparison for two datasets.
#11
Gregory94
closed
4 years ago
1
Create some visualization or quantitative analysis for comparing two datasets with each other.
#10
Gregory94
opened
4 years ago
1
Improving the processing steps for the sequencing data.
#9
Gregory94
closed
4 years ago
9
Determine the minimal length of a genomic region that has a probability larger than P of having at least a single insertion.
#8
Gregory94
closed
4 years ago
10
Convert current python modules and scripts to notebooks including explanatory texts and figures.
#7
Gregory94
closed
4 years ago
1
Create visual overview of reads per gene.
#6
Gregory94
closed
4 years ago
1
Correlation of transposition density (by gene length) per gene with the fitness reported in Constanzo 2016 study
#5
leilaicruz
closed
4 years ago
1
Writing a workflow for SATAY analysis using the command line.
#4
leilaicruz
closed
4 years ago
1
A data post processing Python pipeline to get statistics of transposition density per gene
#3
leilaicruz
closed
4 years ago
1
Dev gregory
#2
Gregory94
closed
4 years ago
0
known and measured essential genes in depth characterization
#1
leilaicruz
closed
4 years ago
5
Previous