issues
search
SpatialTranscriptomicsResearch
/
st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Other
76
stars
31
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error running the pipeline expected str, bytes or os.PathLike object, not NoneType
#133
nishah-27
opened
4 months ago
2
barcodes position
#132
xianliaogithub
closed
10 months ago
0
undefined symbol: _intel_fast_memcmp
#131
xianliaogithub
closed
10 months ago
1
Issue with "Taggd has generated error messages during demultiplexing".
#130
jiangmengnan
closed
1 year ago
0
The function convertEnsemblToNames.py get error!
#129
EddieLv
opened
2 years ago
0
How can i get 'ids' file?
#128
qijt123
closed
2 years ago
1
Issue with demultiplexing using TAGGD.
#127
SalendraSingh
opened
2 years ago
1
Segmentation fault during dataset creation step
#126
JackCollora
opened
2 years ago
3
Running st pipeline unrecognized arguments
#125
ajyaca
opened
2 years ago
5
Could not retrieve index file error
#124
johannesnicolaus
opened
2 years ago
2
Merge from base
#123
jfnavarro
closed
3 years ago
0
Merge from base
#122
jfnavarro
closed
3 years ago
0
build install failed
#121
ganguvamshi
opened
3 years ago
1
Memory error while sorting bam
#120
amdixit
closed
3 years ago
3
Could not retrieve index file
#119
MNM-TB
closed
3 years ago
2
Update from base
#118
jfnavarro
closed
3 years ago
0
overlay molecular data on top of tissue histology
#117
WT215
closed
4 years ago
2
Extract allele specific matrices
#116
WT215
closed
3 years ago
2
Merge pull request #94 from SpatialTranscriptomicsResearch/master
#115
jfnavarro
closed
4 years ago
0
I've met some Error in `Start filtering raw reads`
#114
BioAIEvolu
closed
4 years ago
8
"cdistance.o" missing when building pipeline
#113
fatimasnc
closed
3 years ago
1
Question: are the intermediate BAM files saved?
#112
Puriney
closed
4 years ago
2
Error STAR
#111
alessandriLuca
closed
4 years ago
13
cython python3 directives
#110
jsh58
closed
5 years ago
1
Merge
#109
jfnavarro
closed
5 years ago
0
Merge
#108
jfnavarro
closed
5 years ago
0
Merge from base
#107
jfnavarro
closed
5 years ago
0
Merge from base
#106
jfnavarro
closed
5 years ago
0
Merge from base
#105
jfnavarro
closed
5 years ago
0
Merge from base
#104
jfnavarro
closed
5 years ago
0
add temp folder to samtools sort
#103
jsh58
closed
5 years ago
0
Merge from base
#102
jfnavarro
closed
5 years ago
0
Merge from base
#101
jfnavarro
closed
5 years ago
0
Merge from base
#100
jfnavarro
closed
5 years ago
0
Merge from base
#99
jfnavarro
closed
5 years ago
0
ST Pipeline release
#98
jfnavarro
closed
5 years ago
0
merge from base
#97
jfnavarro
closed
5 years ago
0
merge from base
#96
jfnavarro
closed
5 years ago
0
Merge pull request #80 from SpatialTranscriptomicsResearch/master
#95
jfnavarro
closed
5 years ago
0
Merge from base
#94
jfnavarro
closed
5 years ago
0
merge from base
#93
jfnavarro
closed
5 years ago
0
Merge from base
#92
jfnavarro
closed
5 years ago
0
Fix for the new format of the spotdetector output spot-data-all where…
#91
elhb
opened
5 years ago
1
Merge from base
#90
jfnavarro
closed
5 years ago
0
merge from base
#89
jfnavarro
closed
6 years ago
0
Merge from base
#88
jfnavarro
closed
6 years ago
0
Merge from base
#87
jfnavarro
closed
6 years ago
0
Merge from base
#86
jfnavarro
closed
6 years ago
0
Merge from base
#85
jfnavarro
closed
6 years ago
0
Merge from base
#84
jfnavarro
closed
6 years ago
0
Next