StuntsPT Structure_threader issues

StuntsPT / Structure_threader

A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".

GNU General Public License v3.0

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issues

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multiple runs return identical likelihood

#96 andycrowl closed 1 month ago
6
plink .bed .bim .fam formatting problem

#95 alleneli closed 9 months ago
3
Error on running test data

#94 konopinski opened 1 year ago
1
Issue with seed_generator function when thread count is a multiple of replications

#93 heitor-mendonca closed 1 year ago
7
'Module Not Found' Error running fastStructure

#92 quinn-ca closed 1 year ago
6
Add a "plot order changer" function to the program

#91 StuntsPT opened 2 years ago
0
Can this program generate Delta K diagram? After "job finished successfully", bestk folder only has two text files, evanno.txt and summary.txt....

#90 Maotingru closed 2 years ago
1
ERROR: moving to final location failed

#89 thesnakeguy closed 3 years ago
10
Investigate pip3 failing to install on Windows

#88 StuntsPT closed 4 years ago
1
Error running faststructure

#87 royfrancis closed 4 years ago
11
ERROR running STRUCTURE in command line

#86 cahuparo closed 2 years ago
2
structure_threader not using all available cores

#85 oospina closed 5 years ago
3
Structure_threader issue

#84 Ram-Nagar closed 4 years ago
9
plot function error

#83 peuclide closed 5 years ago
1
structure_threader with multiple --extra_opts not working

#82 oviscanadensis closed 5 years ago
4
structurethreader not multithreading

#81 jkreinz closed 5 years ago
1
*Structure_threader* is not parsing correctlly the results of STRUCTURE when there is a missing `extraparams` file

#80 StuntsPT closed 6 years ago
1
Plotly. Font is deprecated

#79 3nrique0 closed 5 years ago
3
Numpy error during MavericK normalization

#78 cathynewman closed 6 years ago
4
Using the "plot" function with MavericK output is not working

#77 StuntsPT closed 6 years ago
0
some problem with plotly

#76 mthon closed 2 years ago
9
When using an indfile to sort the plots, the population numbers are sorted alphabeticaly, and not numericaly

#75 StuntsPT closed 6 years ago
0
structure_threader problem with seed

#74 StuntsPT closed 6 years ago
5
Structure_threader does not check if the user has write permissions for the results dir

#73 StuntsPT closed 7 years ago
0
MavericK "outputLikelihood" should be merged

#72 StuntsPT opened 7 years ago
0
Update the docs with new functionality

#71 StuntsPT closed 7 years ago
0
Provide an option to generate skeleton parameter files

#70 StuntsPT closed 7 years ago
0
Improve plotting options

#69 StuntsPT closed 7 years ago
0
The comparative Qmatrix plot also appeares to have titles listed in reverse order

#68 StuntsPT closed 7 years ago
0
Providing a list of values to the parameters "alpha" and "alphaPropSD" causes a failure.

#67 StuntsPT closed 7 years ago
0
Problem wrapping MavericK when TI is turned off

#66 StuntsPT closed 7 years ago
0
Wrapping MavericK under windows fails

#65 StuntsPT closed 7 years ago
0
Reorganize and improve installation instructions

#64 StuntsPT closed 7 years ago
0
Improve "BestK" presentation for MavericK

#63 StuntsPT closed 7 years ago
1
Structure_threader may be treating analyses like a black box

#62 StuntsPT closed 7 years ago
1
Improve field tests to try more parameter variations

#61 StuntsPT closed 7 years ago
1
Fix Structure href.

#60 briantrice closed 7 years ago
1
Problem with "plot prefix"

#59 StuntsPT closed 7 years ago
0
Population delimiters not showing with --use-ind-labels option

#58 ODiogoSilva closed 7 years ago
0
"faststructure" should be spelled with only lowecase in the "-f" plot option

#57 StuntsPT closed 7 years ago
1
K=1 is being plotted and Structure_threader throws an error

#56 StuntsPT closed 7 years ago
0
Got this error today

#55 StuntsPT closed 7 years ago
0
Running Structure_threader without arguments triggers a crash. We don't want this.

#54 StuntsPT closed 7 years ago
0
Link when wrapping fastStructure

#53 StuntsPT closed 7 years ago
0
*Structure_threader* fails if "extraparams" is not found

#52 StuntsPT closed 7 years ago
0
Plotly output filenames should have ".html" suffix

#51 StuntsPT closed 7 years ago
0
problems running Structure_threader - Structure path problems with "c:\programfiles (x86)\..."

#50 Sparassus closed 2 years ago
23
Using a popfile is not woring as expected

#49 StuntsPT closed 7 years ago
0
Use logging for terminal output

#48 ODiogoSilva closed 7 years ago
0
Retrieve bestk at the end of the run

#47 ODiogoSilva closed 7 years ago
0