TeamXenonDuke xenon-gas-exchange-consortium issues

TeamXenonDuke / xenon-gas-exchange-consortium

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73 error reading mrd file 1

#83 davidmummy closed 1 week ago
1
hb_correction overrides manual rbc:m ratio

#82 YonniFriedlander closed 1 week ago
3
MacOS 15.1 upgrade broke N4ITK

#81 andrewmchorse opened 1 week ago
0
change the reference_208_ppm threshold_rbc to [0.0977, 0.2641, 0.4967, 0.7896, 1.1391]

#80 Sarahhongqin closed 2 weeks ago
0
Vent and RBC "High" category is using top 2 bins instead of top 1

#79 davidmummy closed 1 week ago
1
Reference 208 ans 218 PPM reference on RBC is the same

#78 sl609 closed 2 weeks ago
2
Manual gradient delay withno automatic

#77 fuyaoli-lisa closed 1 week ago
1
208 vs 218ppm code change

#76 andrewmchorse closed 2 months ago
2
Matplot backend

#75 YonniFriedlander closed 2 months ago
2
Adding "h_radial" to UTE twix file searching list in io_utils.py

#74 Sarahhongqin closed 2 months ago
0
Error reading .mrd file

#73 YonniFriedlander closed 1 week ago
3
Include "**h_radial**" in search for proton scan (GX Pipeline Edition)

#72 davidmummy closed 2 months ago
1
gradient delay values should be set in a user config file

#71 bdriehuys closed 1 week ago
2
Pipeline may not need both an advanced and basic config file

#70 bdriehuys opened 3 months ago
0
Conflict between Base Config and Demo Config files

#69 bdriehuys closed 3 months ago
1
Implementing strong n4 itk biasfield correction

#68 sl609 closed 2 months ago
10
Multi echo compatibility

#67 sl609 closed 2 months ago
2
Read both gas dis traj (#58)

#66 sl609 closed 3 months ago
0
New Feature: Fractional Ventilation Option

#65 davidmummy opened 3 months ago
0
Thresholds: enable users to choose reference thresholds but auto-detect 208 vs 218ppm

#64 davidmummy closed 2 months ago
2
Iowa complex conjugate

#63 sl609 closed 3 months ago
6
Python version

#62 Rosenberg78 opened 3 months ago
6
Implement "aggressive" version of N4ITK to fix issue with apical coil drop-out

#61 davidmummy closed 2 months ago
4
Read both gas dis traj (#58)

#60 sl609 closed 3 months ago
1
Implement automatic complex conjugate for GE platform, and proper orientation for all 3 platforms

#59 davidmummy closed 3 months ago
4
Read both gas dis traj

#58 davidmummy closed 4 months ago
0
Implement vendor-specific image reorientation

#57 davidmummy closed 4 months ago
1
Pipeline should read both gas and dissolved-phase trajectories from MRD

#56 davidmummy closed 4 months ago
6
54 updating help text and config template for external users

#55 drewclements closed 5 months ago
0
Updating Help Text and Config Template for External Users

#54 drewclements closed 5 months ago
0
Pipeline rejects BOOL mask created by its own CNN (McMaster)

#53 davidmummy opened 5 months ago
1
Modify pipeline to ignore multiple echoes

#52 davidmummy closed 2 months ago
5
50 update readme to point to xectc xemri specification

#51 davidmummy closed 7 months ago
0
Update readme to point to XeCTC XeMRI specification

#50 davidmummy closed 7 months ago
0
did not set grad delay in normal dixon w/ bonus spectra case

#49 junlanlu closed 7 months ago
0
Perform registration of proton to gas image

#48 davidmummy opened 7 months ago
0
Updated code for reading in DICOM UTE's

#47 annacostelle closed 7 months ago
1
41 add citationcff file

#46 davidmummy closed 7 months ago
1
fixed getting data from twix files

#45 junlanlu closed 7 months ago
0
Revert "fix logic to read normal dixon with 87 bonus spectra;"

#44 junlanlu closed 7 months ago
0
fix logic to read normal dixon with 87 bonus spectra;

#43 junlanlu closed 7 months ago
1
Issues Reading 218ppm Radial Dixon

#42 drewclements closed 7 months ago
0
Add citation.cff file

#41 davidmummy closed 7 months ago
0
add ability to reconstruct only gas images, without proton in config …

#40 junlanlu closed 8 months ago
0
New ability to read in DICOMs for the proton scan

#39 davidmummy closed 7 months ago
1
Enable Gas Exchange Recon and Visualization without Proton Scan

#38 bdriehuys closed 8 months ago
0
roll back ventilation threshold and reference histogram parameters to…

#37 junlanlu closed 8 months ago
0
Roll back the ventilation distribution and thresholds to 2023 values

#36 bdriehuys closed 8 months ago
0
"Raw Files Not Found" error (UBC)

#35 davidmummy closed 8 months ago
1
Issues reading MRD input (McMaster)

#34 davidmummy closed 2 months ago
3