TheAxonLab hcph-sops issues

TheAxonLab / hcph-sops

SOPs of the HCPh project

https://www.axonlab.org/hcph-sops/

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Set up EyeLink and PyEdfRead in 2024

#481 Evelyn92 opened 2 weeks ago
2
A snippet for directly writing the dataframe "recording" and metadata into BIDS format

#480 Evelyn92 opened 2 weeks ago
0
ENH: perform QCT analysis in subject space

#479 celprov closed 3 weeks ago
0
FIX: FC distribution plot was not showing the distribution per session, but per FC matrix row

#478 celprov opened 1 month ago
0
FIX: correct ratings extraction from mongodb

#477 celprov opened 1 month ago
0
ENH: add QA/QC protocol schema

#476 celprov closed 2 months ago
0
FIX: run ruff on `reports.py` and `funconn_group.py`

#475 celprov closed 2 months ago
0
Plot the ratings in relation to the IQMs or PCA components to see if there are clear patterns

#474 celprov opened 2 months ago
0
Build preview is broken in CircleCI

#473 celprov closed 2 months ago
1
FIX: Update *mkdocs-jupyter* plugin pin (to 0.24.7+)

#472 oesteban closed 2 months ago
0
FIX: Update *DataLad* procedure to include ``.svg`` and ``.gii``

#471 oesteban closed 2 months ago
1
ENH: notebook to calibrate regressor to flag HCPh T1w images for exclusion

#470 celprov closed 2 months ago
0
ENH: extract a few metrics about the rating experience

#469 celprov opened 2 months ago
0
bug-fix: correct sync .py script name

#468 MauroLeidi closed 2 months ago
0
ENH: modify bids datalad procedure so svg are saved to gitannex

#467 celprov closed 2 months ago
1
ENH: add code to check that all mriqc reports were generated

#466 celprov closed 2 months ago
0
Our procedure `cfg_bids` does not work with new datalad version because `cfg_metadatatypes` is deprecated

#465 celprov closed 2 months ago
3
WIP: initiate QC criteria for DWI

#464 celprov opened 2 months ago
0
FIX: small fixes in the QC of unprocessed data section

#463 celprov closed 2 months ago
0
ENH: add a QC group reportlet reporting about censoring

#462 celprov closed 2 months ago
0
ENH: assemble figures related to QC of functional connectivity into a single HTML report using nireports

#461 celprov closed 2 months ago
0
FIX: QA/QC of denoising not implemented

#460 celprov closed 2 months ago
0
FIX: revision of the EDF to BIDS conversion

#459 celprov opened 3 months ago
0
[EDF to BIDS conversion] clean up obsolete commented lines of `eyetrackingrun.py` and make sure code snippets in `edf_to_bids.md` match `eyetrackingrun.py`

#458 celprov opened 3 months ago
0
[EDF to BIDS revision] Clarify extraction of validation information from eye-tracking data

#457 celprov opened 3 months ago
0
[EDF to BIDS revision] Unclear explanation about how to extract `Startime` and `Stoptime` metadata

#456 celprov opened 3 months ago
0
[EDF to BIDS revision] Add code snippet about how to call the script for EDF to BIDS conversion

#455 celprov opened 3 months ago
0
Define fMRIPrep output space

#454 celprov opened 3 months ago
0
Define what means for susceptibility distortion to be large

#453 celprov opened 3 months ago
0
Add QC criteria for T2w anatomical

#452 celprov opened 3 months ago
0
Modify FC to be computed from surfaces

#451 celprov opened 3 months ago
0
Write SOP for clinical acquisition

#450 celprov opened 3 months ago
0
Add SIMON dataset in Table 2

#449 celprov opened 3 months ago
0
Add CNeuroMod dataset in Table 2

#448 celprov opened 3 months ago
0
[Manuscript] Adapt Table 3 and Table 4 as we will acquire multi-echo on the clinical scanner as well

#447 celprov opened 3 months ago
0
Should we remove the "Extended reports shared across echos" section of the MRIQC report?

#446 celprov opened 3 months ago
0
FIX: Add replacement in heudiconv recipe

#445 oesteban closed 4 months ago
0
ENH: implement a QC checkpoint after denoising and FC extraction

#444 celprov closed 3 months ago
0
Exclusion criteria missing for T2* GM values of fMRIPrep visual report

#443 celprov opened 5 months ago
0
Exclusion criteria missing for T2* map of fMRIPrep visual report

#442 celprov opened 5 months ago
0
Exclusion criteria missing for anatomical conformation section of fMRIPrep visual report

#441 celprov opened 5 months ago
0
FIX: revisit preprocessed data QC

#440 celprov closed 3 months ago
2
Compile figures of the QC checkpoints on denoised data into an HTML report

#439 celprov closed 2 months ago
1
Allow to tweak confounds regressed for FC extraction

#438 celprov opened 5 months ago
0
FIX: Rescue *Psychopy* logs of pilot and excluded sessions

#437 oesteban closed 5 months ago
0
ENH: Add editor of ``B0FieldSource``

#436 oesteban closed 5 months ago
0
ENH: Add script to normalize fieldmap metadata

#435 oesteban closed 5 months ago
0
FIX: Remove unnecessary schedule

#434 oesteban closed 5 months ago
0
ENH: Improve the ppjson module

#433 oesteban closed 5 months ago
0
We could be more explicit about how to set the calibrations points for GA calibration

#432 celprov opened 5 months ago
0