TheAxonLab hcph-sops issues

TheAxonLab / hcph-sops

SOPs of the HCPh project

https://www.axonlab.org/hcph-sops/

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issues

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ENH: Add instructions to run *fMRIPrep* on *Curnagl*

#508 oesteban opened 1 month ago
0
ENH: Add new subsection to processing about HPC with *DataLad* tricks

#507 oesteban closed 1 month ago
0
ENH: Robustify/finalize physio to BIDS conversion

#506 oesteban closed 1 month ago
0
FIX: correct the bids_id of the last two Prisma sessions

#504 celprov closed 2 months ago
0
Modify standard protocol schedule according last minute changes

#503 celprov opened 3 months ago
0
ENH: Data management improvements in wave 2 collection

#502 oesteban opened 3 months ago
0
ENH: instruct to reacquire a localizer before entering the room...

#501 celprov opened 3 months ago
0
FIX: rectify details about opening the mood questionnaires

#500 celprov opened 3 months ago
0
ENH: Proposal for rescheduling

#499 oesteban closed 3 months ago
0
FIX: rendering bullet points in scanning notes

#498 celprov closed 3 months ago
0
ENH: indicate that on the Vidas you have to touch the screen to turn off the alarms

#497 celprov closed 3 months ago
1
ENH: add procedure to unlock the USER directory on Vida to enable saving the protocol

#496 celprov closed 3 months ago
0
ENH: add picture of speaker in Vida and VidaFit different from Prisma

#495 celprov closed 3 months ago
0
FIX: order and duration of sequences of standard protocol

#494 celprov closed 3 months ago
0
ENH: add standard protocols

#493 celprov closed 3 months ago
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ENH: Modify the BIDS session identifier to indicate wave 2

#492 oesteban closed 3 months ago
0
Cut a new release

#491 oesteban opened 3 months ago
0
ENH: Add schedule for the standard imaging protocol

#490 oesteban closed 3 months ago
1
FIX: migrate issue template to hcph-dataset repository

#489 celprov closed 3 months ago
0
Generate the order in which we will acquire the PE directions in the standard protocol

#488 celprov closed 3 months ago
0
Installation of matplotlib==3.3 fails

#486 celprov opened 3 months ago
0
Installation of mriqc-learn github repo fails

#485 celprov closed 3 months ago
2
Add generalization protocols to SOPs

#484 oesteban closed 3 months ago
0
Update protocols with correct timings and ordering

#483 oesteban closed 3 months ago
0
Mislabeled scanner rooms

#482 oesteban opened 3 months ago
0
Set up EyeLink and PyEdfRead in 2024

#481 Evelyn92 opened 5 months ago
2
A snippet for directly writing the dataframe "recording" and metadata into BIDS format

#480 Evelyn92 opened 5 months ago
0
ENH: perform QCT analysis in subject space

#479 celprov closed 5 months ago
0
FIX: FC distribution plot was not showing the distribution per session, but per FC matrix row

#478 celprov opened 6 months ago
0
FIX: correct ratings extraction from mongodb

#477 celprov opened 6 months ago
0
ENH: add QA/QC protocol schema

#476 celprov closed 7 months ago
0
FIX: run ruff on `reports.py` and `funconn_group.py`

#475 celprov closed 7 months ago
0
Plot the ratings in relation to the IQMs or PCA components to see if there are clear patterns

#474 celprov opened 7 months ago
0
Build preview is broken in CircleCI

#473 celprov closed 7 months ago
1
FIX: Update *mkdocs-jupyter* plugin pin (to 0.24.7+)

#472 oesteban closed 7 months ago
0
FIX: Update *DataLad* procedure to include ``.svg`` and ``.gii``

#471 oesteban closed 7 months ago
1
ENH: notebook to calibrate regressor to flag HCPh T1w images for exclusion

#470 celprov closed 7 months ago
0
ENH: extract a few metrics about the rating experience

#469 celprov opened 7 months ago
0
bug-fix: correct sync .py script name

#468 MauroLeidi closed 7 months ago
0
ENH: modify bids datalad procedure so svg are saved to gitannex

#467 celprov closed 7 months ago
1
ENH: add code to check that all mriqc reports were generated

#466 celprov closed 7 months ago
0
Our procedure `cfg_bids` does not work with new datalad version because `cfg_metadatatypes` is deprecated

#465 celprov closed 7 months ago
3
WIP: initiate QC criteria for DWI

#464 celprov opened 7 months ago
0
FIX: small fixes in the QC of unprocessed data section

#463 celprov closed 7 months ago
0
ENH: add a QC group reportlet reporting about censoring

#462 celprov closed 7 months ago
0
ENH: assemble figures related to QC of functional connectivity into a single HTML report using nireports

#461 celprov closed 7 months ago
0
FIX: QA/QC of denoising not implemented

#460 celprov closed 7 months ago
0
FIX: revision of the EDF to BIDS conversion

#459 celprov opened 8 months ago
0
[EDF to BIDS conversion] clean up obsolete commented lines of `eyetrackingrun.py` and make sure code snippets in `edf_to_bids.md` match `eyetrackingrun.py`

#458 celprov opened 8 months ago
0
[EDF to BIDS revision] Clarify extraction of validation information from eye-tracking data

#457 celprov opened 8 months ago
0