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TuragaLab
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DECODE
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
GNU General Public License v3.0
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Sample training data takes tens of minutes one epoch on Linux with an A800
#241
GuohuaQiu1999
opened
3 weeks ago
0
Package installation is broken in Ubuntu 20.24
#237
mmarinriera
opened
2 months ago
0
Google Colab Notebook v0.10 may be outdated?
#233
Haydnspass
opened
8 months ago
0
The bug of DeepSTORM3D post-processing mentioned in the paper's Supplementary section 1.
#223
yueyue0112
closed
1 year ago
1
[Training | FIT] Circular Import of decode in the colab trainin example
#222
Hankeun-Lee
closed
1 year ago
1
Fresh install of DECODE 0.10.2
#218
cleterrier
closed
1 year ago
1
Install numba in DECODE environment?
#217
cleterrier
closed
1 year ago
5
Fitting.ipynb to fitting.py
#216
Ryan-Gh1
closed
1 year ago
3
Python in Colab updated to 3.10 [Training | FIT] Failed training or fit.
#215
EndlessPush
closed
1 year ago
3
Python 3.9 in Colab
#212
Haydnspass
closed
1 year ago
1
Training on Windows is slower with eight workers than with zero workers
#210
Nuka-Kola
closed
1 year ago
0
tabbed in line 25 (issue #208)
#209
Nuka-Kola
closed
1 year ago
1
v0.10.1 fails in dataloader_customs for num_workers = 0
#208
Haydnspass
closed
1 year ago
0
Include docs in bump2version
#205
Haydnspass
closed
1 year ago
0
replaced floordiv and fixed the stack
#204
Nuka-Kola
closed
1 year ago
0
Release/0.10 deprications
#203
Nuka-Kola
closed
1 year ago
1
Can not use cuda?
#202
XH-B
closed
1 year ago
1
removed comment in future.py
#201
Nuka-Kola
closed
1 year ago
1
.to and .device methods plus decorator
#200
Nuka-Kola
closed
1 year ago
0
Implement Inverse of Offset2Coordinate
#199
Haydnspass
closed
1 year ago
0
fix strict in unit test
#198
Nuka-Kola
closed
1 year ago
0
Post-Processing slightly inconsistent for close high prob emitters
#197
Haydnspass
opened
1 year ago
0
Setup Codespaces dev container for GitHub
#196
Haydnspass
closed
1 year ago
0
Evaluation is messy and out of date
#195
Haydnspass
closed
1 year ago
0
WeightedErrors need updating
#194
Haydnspass
closed
1 year ago
0
A problem about running DECODE in Google Colab
#191
Haydnspass
closed
1 year ago
2
Add nightly releases
#189
Haydnspass
closed
1 year ago
0
Spline breaks with certain image size
#187
Haydnspass
closed
1 year ago
1
Deprecate python 3.6
#185
Haydnspass
closed
2 years ago
1
scipy 1.8
#184
Nuka-Kola
closed
2 years ago
1
pin tifffile
#183
Nuka-Kola
closed
2 years ago
0
Generalise ROI to Frame
#182
Haydnspass
opened
2 years ago
0
Gaussian PSF should be made faster and easier for 2D training
#181
Haydnspass
closed
1 year ago
0
Dummy issue
#180
Haydnspass
closed
2 years ago
0
scipy version 1.9.1 ValueError while training
#178
JohannaRahm
closed
1 year ago
6
TypeError: imread() got unexpected keyword arguments 'multifile'
#177
HypnosWei
closed
1 year ago
4
Memory Mapped Tensor for Tiff files
#176
Haydnspass
closed
1 year ago
0
Calibration loader fails on newer calibration files
#175
Haydnspass
opened
2 years ago
0
Think about docs for parameters
#174
Haydnspass
opened
2 years ago
0
Remove nested lists in parameter file
#173
Haydnspass
opened
2 years ago
0
Add Instructions for 2D fitting
#171
Haydnspass
opened
2 years ago
0
Trouble Installing torch 1.7.1 on Colab
#168
frankfazekas
closed
2 years ago
3
Bead Calibration pixel Size
#161
pranayj77
closed
2 years ago
0
Loading the TIFF files
#150
AnshulToshniwal
closed
2 years ago
4
ValueError exception in loss function
#149
jcnossen
closed
2 years ago
1
PyTorch version with support for GPU
#146
tsuijenk
closed
3 years ago
1
Running it on a CPU (since I don't have CUDA-enabled GPU)
#139
tsuijenk
closed
3 years ago
0
Fitting Model: Allowable data types for input image (TIF vs TIFF)
#138
tsuijenk
closed
3 years ago
3
Conda installs old decode version by default
#137
tsuijenk
closed
3 years ago
7
Gridding artifact in the localization predictions
#132
tdaugird
closed
3 years ago
3
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