UCL STIR-GATE-Connection issues

UCL / STIR-GATE-Connection

Example files on how to run STIR on GATE data

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issues

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Digitizer macro files are not compatible with GATE 9.3 or newer versions

#98 imbeatriz opened 1 month ago
1
Gate via Python may significantly improve this project

#97 robbietuk opened 1 month ago
0
Segmentation Fault when Unlisting .root files from mMR scanner

#96 averygong07 opened 1 month ago
2
Update ComputePoissonDataCorrections.sh

#95 katerinachytra closed 2 months ago
1
D690 Geometry Inconsistency

#94 hluszoke opened 4 months ago
1
fix typo in mMR digitiser macro

#93 samdporter closed 1 year ago
2
Mistakes in `ComputePoissonDataCorrections.sh` documentation

#92 robbietuk closed 2 years ago
1
the unit of reconstructed image

#91 mele-y closed 2 years ago
3
Add a Citation.cff file

#90 robbietuk opened 2 years ago
0
STIR ray tracing parameters restrict to cylindrical fov

#89 robbietuk closed 1 year ago
1
Example mMR geometry may be out of date?

#88 robbietuk opened 2 years ago
1
about norm factors of mMR

#87 mele-y closed 2 years ago
2
Example GATE geometries may not be compatable with STIR 5.0.1 due to rotation/offset changes

#86 robbietuk opened 2 years ago
0
Fix scripts for bash etc

#85 KrisThielemans closed 3 weeks ago
2
Something wrong with the script ExampleSTIR-GATE.sh

#84 mele-y closed 2 years ago
12
Debugging script to unlist different event types into different sinograms

#83 robbietuk closed 1 year ago
1
Combining many ROOT files using `hadd` can exeed the (default) 100GB limit

#82 robbietuk closed 3 years ago
1
UnlistRoot additional argument for NumEventsToStore

#81 robbietuk closed 3 years ago
0
Limit unlisting to a particular number of events.

#80 robbietuk closed 3 years ago
0
Example/Debugging unlisting scripts for demonstrating the exclusion of different types of events

#79 robbietuk closed 1 year ago
0
source this_SGC.sh from a different directory issue

#78 robbietuk closed 3 years ago
0
Fix this_SGC.sh issue for when file is sourced out of directory.

#77 robbietuk closed 3 years ago
0
OSEM reconstruction example

#76 robbietuk closed 3 years ago
5
Creation of DataCorrectionsComputation directory

#75 robbietuk closed 3 years ago
1
SGCPATH checks

#74 robbietuk closed 3 years ago
2
Scripts are depenant on running from SGC VoxelisedSimulation directory

#73 robbietuk closed 3 years ago
5
ComputePoissonDataCorrections will fail if not called from `VoxelisedSimulation` directory

#72 robbietuk closed 3 years ago
1
Adapting EstimateScatter into a data corrections computation script

#71 robbietuk closed 3 years ago
2
Proposal for a general corrections script to compute all corrections for reconstruction

#70 robbietuk closed 3 years ago
2
Computation of the multiplicative factors

#69 robbietuk closed 3 years ago
0
ComputePoissonDataCorrections script requires flip in z of attenuation map from GATE

#68 robbietuk closed 1 year ago
2
Optional arguments to set the upper and lower energy window thresholds

#67 robbietuk closed 3 years ago
0
EstimateRandomsFromDelayed reworked

#66 robbietuk closed 3 years ago
0
RandomsEstimate problems

#65 robbietuk closed 3 years ago
0
Remove addition of 1's to the ${OutputFilename}" sinogram

#64 robbietuk closed 3 years ago
3
EstimateSTIRGATENorm mistakenly adds 1s to the normalisation sinogram

#63 robbietuk closed 3 years ago
0
Change the D690 offset (num of detectors) := 0

#62 robbietuk closed 3 years ago
0
Minor fixes

#61 robbietuk closed 3 years ago
1
Comment position in par file causes KeyParser error

#60 francescaleek closed 3 years ago
1
estimation of normalisation factors will fail for D690

#59 KrisThielemans closed 1 month ago
25
Reduce discretisation artefacts

#58 KrisThielemans closed 3 years ago
3
normalisation and discretisation

#57 KrisThielemans closed 3 years ago
4
v1.1 TODO

#56 robbietuk closed 1 year ago
1
Unlisting root files with random rejection does not use an random seed

#55 robbietuk closed 4 years ago
0
Unlisting has hardcoded energy infomation

#54 robbietuk closed 3 years ago
1
Confusing comment

#53 robbietuk closed 4 years ago
0
Norm fix and span

#52 robbietuk closed 4 years ago
4
error in norm-estimation script

#51 KrisThielemans closed 4 years ago
2
Scatter estimation script

#50 robbietuk closed 3 years ago
9
Need execulable errors to exit scripts

#49 robbietuk closed 4 years ago
4