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UCLOrengoGroup
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cath-todo
Issues relating to the CATH protein structure classification web pages
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Show all domain architectures in FunFam
#54
sillitoe
opened
2 years ago
1
Allow all tabular data to be downloaded
#53
sillitoe
opened
2 years ago
0
FunFam: provide a reason why FunFams are split / joined
#52
sillitoe
opened
2 years ago
0
FunFam: explain why some clusters are missing representative structure
#51
sillitoe
opened
2 years ago
0
Find UniProt accession in PDB / FunFam / Superfamily
#50
sillitoe
opened
2 years ago
0
Generate all-versus-all FunFam scores (within superfamily)
#49
sillitoe
opened
4 years ago
0
Show inclusion threshold on FunFam search results
#48
sillitoe
opened
4 years ago
0
Add text to describe how the FunFam names are produced
#47
sillitoe
opened
4 years ago
0
Fix structural neighbourhood plot
#46
sillitoe
opened
4 years ago
0
Provide text description for the domain classification page
#45
sillitoe
opened
4 years ago
0
Add documentation for Structural Clusters
#44
sillitoe
opened
4 years ago
0
Make it easier to get FASTA sequences of PDBs, PDB chains and CATH Domains
#43
sillitoe
opened
4 years ago
0
Internal error if CATH SuperFamily is no longer in CATH
#42
bordin89
opened
4 years ago
0
Provide EC and GO mapping for CATH releases
#41
sillitoe
opened
5 years ago
0
Investigate web site outage (Mar 5, 2019)
#40
sillitoe
opened
5 years ago
2
Website is down - Varnish Cache is unable to reach the back end server.
#39
codeMyDNA
closed
5 years ago
1
look up taxon information for CATH domains
#38
sillitoe
closed
5 years ago
0
cath domain: error when superfamily exists in 'current', but not 'latest'
#37
sillitoe
closed
5 years ago
3
funfhmmer api: add inclusion thresholds to results
#36
sillitoe
opened
5 years ago
0
searching large sequences against funfam produces error
#35
sillitoe
closed
5 years ago
1
funfhmmer api: provide example python client
#34
sillitoe
opened
6 years ago
0
funfhmmer api: fix web page for 'check' endpoint (or improve error message when 'accept' header is missing)
#33
sillitoe
closed
6 years ago
1
Browse CATH by EC / GO term
#32
sillitoe
opened
6 years ago
0
Allow user to view alignment of "domain" search results
#31
sillitoe
opened
6 years ago
0
Request code review for IBIS mapping
#30
sayonidas03
closed
6 years ago
1
Calculate a frequency-based score for mapped known sites (CSA/IBIS) in FunFams
#29
sayonidas03
closed
6 years ago
2
467 v4.2 FunFam empty .sto files
#28
sayonidas03
opened
6 years ago
1
four v4.2 FunFam Stockholm files cannot be found in /cath/data
#27
sayonidas03
opened
6 years ago
1
PDB IDs should not be case sensitive (on API / web)
#26
sillitoe
closed
6 years ago
1
Crosshits - classification node age error
#25
nataliedawson
closed
6 years ago
1
Modification of Crosshits web pages to aid automation
#24
nataliedawson
opened
6 years ago
0
no data in sequence/structure diversity chart
#23
sillitoe
closed
6 years ago
1
Restrict EC annotations to SWISSPROT sequences by default
#22
sillitoe
opened
6 years ago
0
Improve README of CATH's download page.
#21
shouldsee
closed
5 years ago
1
Improve documentation on CATH API
#20
shouldsee
closed
7 years ago
1
Sequence/structure analysis
#19
sillitoe
opened
7 years ago
8
Add EC description to Cath Domain Description File
#18
sillitoe
opened
7 years ago
0
allow local PDB files to be submitted on pairwise SSAP server
#17
sillitoe
opened
7 years ago
0
Discrepancy of versions in CATH-B?
#16
sillitoe
closed
7 years ago
24
Provide descriptions for each class / architecture in CATH
#15
sillitoe
opened
7 years ago
0
Problem with sequence search (403)
#14
sillitoe
closed
7 years ago
5
README files have disappeared on the download pages
#13
sillitoe
closed
7 years ago
1
improve the default error page
#12
sillitoe
closed
7 years ago
1
handle PDB structures without chain ids
#11
sillitoe
closed
7 years ago
1
sequence search: improve handling of no matches
#10
sillitoe
closed
7 years ago
2
Web: problems with sequence search on old Firefox
#9
sillitoe
opened
7 years ago
0
Add redirect from old FunFHMMER to new sequence search page
#8
sillitoe
closed
7 years ago
1
Sequence/structure: export PDB with conservation score as B-factor
#7
sillitoe
opened
7 years ago
0
Show CATH domain architecture on PDB page
#6
sillitoe
opened
7 years ago
0
Sequence alignments: add query sequence to alignment
#5
sillitoe
opened
7 years ago
0
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