UCLOrengoGroup cath-todo issues

UCLOrengoGroup / cath-todo

Issues relating to the CATH protein structure classification web pages

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issues

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Show all domain architectures in FunFam

#54 sillitoe opened 2 years ago
1
Allow all tabular data to be downloaded

#53 sillitoe opened 2 years ago
0
FunFam: provide a reason why FunFams are split / joined

#52 sillitoe opened 2 years ago
0
FunFam: explain why some clusters are missing representative structure

#51 sillitoe opened 2 years ago
0
Find UniProt accession in PDB / FunFam / Superfamily

#50 sillitoe opened 2 years ago
0
Generate all-versus-all FunFam scores (within superfamily)

#49 sillitoe opened 4 years ago
0
Show inclusion threshold on FunFam search results

#48 sillitoe opened 4 years ago
0
Add text to describe how the FunFam names are produced

#47 sillitoe opened 4 years ago
0
Fix structural neighbourhood plot

#46 sillitoe opened 4 years ago
0
Provide text description for the domain classification page

#45 sillitoe opened 4 years ago
0
Add documentation for Structural Clusters

#44 sillitoe opened 4 years ago
0
Make it easier to get FASTA sequences of PDBs, PDB chains and CATH Domains

#43 sillitoe opened 4 years ago
0
Internal error if CATH SuperFamily is no longer in CATH

#42 bordin89 opened 4 years ago
0
Provide EC and GO mapping for CATH releases

#41 sillitoe opened 5 years ago
0
Investigate web site outage (Mar 5, 2019)

#40 sillitoe opened 5 years ago
2
Website is down - Varnish Cache is unable to reach the back end server.

#39 codeMyDNA closed 5 years ago
1
look up taxon information for CATH domains

#38 sillitoe closed 5 years ago
0
cath domain: error when superfamily exists in 'current', but not 'latest'

#37 sillitoe closed 5 years ago
3
funfhmmer api: add inclusion thresholds to results

#36 sillitoe opened 5 years ago
0
searching large sequences against funfam produces error

#35 sillitoe closed 5 years ago
1
funfhmmer api: provide example python client

#34 sillitoe opened 6 years ago
0
funfhmmer api: fix web page for 'check' endpoint (or improve error message when 'accept' header is missing)

#33 sillitoe closed 6 years ago
1
Browse CATH by EC / GO term

#32 sillitoe opened 6 years ago
0
Allow user to view alignment of "domain" search results

#31 sillitoe opened 6 years ago
0
Request code review for IBIS mapping

#30 sayonidas03 closed 6 years ago
1
Calculate a frequency-based score for mapped known sites (CSA/IBIS) in FunFams

#29 sayonidas03 closed 6 years ago
2
467 v4.2 FunFam empty .sto files

#28 sayonidas03 opened 6 years ago
1
four v4.2 FunFam Stockholm files cannot be found in /cath/data

#27 sayonidas03 opened 6 years ago
1
PDB IDs should not be case sensitive (on API / web)

#26 sillitoe closed 6 years ago
1
Crosshits - classification node age error

#25 nataliedawson closed 6 years ago
1
Modification of Crosshits web pages to aid automation

#24 nataliedawson opened 6 years ago
0
no data in sequence/structure diversity chart

#23 sillitoe closed 6 years ago
1
Restrict EC annotations to SWISSPROT sequences by default

#22 sillitoe opened 6 years ago
0
Improve README of CATH's download page.

#21 shouldsee closed 5 years ago
1
Improve documentation on CATH API

#20 shouldsee closed 7 years ago
1
Sequence/structure analysis

#19 sillitoe opened 7 years ago
8
Add EC description to Cath Domain Description File

#18 sillitoe opened 7 years ago
0
allow local PDB files to be submitted on pairwise SSAP server

#17 sillitoe opened 7 years ago
0
Discrepancy of versions in CATH-B?

#16 sillitoe closed 7 years ago
24
Provide descriptions for each class / architecture in CATH

#15 sillitoe opened 7 years ago
0
Problem with sequence search (403)

#14 sillitoe closed 7 years ago
5
README files have disappeared on the download pages

#13 sillitoe closed 7 years ago
1
improve the default error page

#12 sillitoe closed 7 years ago
1
handle PDB structures without chain ids

#11 sillitoe closed 7 years ago
1
sequence search: improve handling of no matches

#10 sillitoe closed 7 years ago
2
Web: problems with sequence search on old Firefox

#9 sillitoe opened 7 years ago
0
Add redirect from old FunFHMMER to new sequence search page

#8 sillitoe closed 7 years ago
1
Sequence/structure: export PDB with conservation score as B-factor

#7 sillitoe opened 7 years ago
0
Show CATH domain architecture on PDB page

#6 sillitoe opened 7 years ago
0
Sequence alignments: add query sequence to alignment

#5 sillitoe opened 7 years ago
0