UCSC-MedBook patient-care issues

UCSC-MedBook / patient-care

Clincian facing portal showing pathways, signatures, and genes of interest

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issues

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address short-term fix for #102

#103 mokolodi1 closed 8 years ago
2
Outlier analysis list page is slow

#102 mokolodi1 closed 7 years ago
1
Pre gsea

#101 mokolodi1 closed 8 years ago
0
Disallow creation of sample groups with non-unique sample names across multiple datasets.

#100 e-t-k closed 7 years ago
0
Store expression / variance filters on sample groups as gene sets instead of blobs

#99 e-t-k opened 8 years ago
1
Adds icons to display DGIdb drug next to gene names

#98 rcurrie closed 8 years ago
3
All staging links redirect to prod

#97 cygao opened 8 years ago
0
WHen making data sets, allow "other" option for eg quantification method

#96 e-t-k closed 7 years ago
2
Develop

#95 mokolodi1 closed 7 years ago
1
sample group versions are confusing

#94 e-t-k opened 8 years ago
2
Transaction history and basic metadata.

#93 tedgoldstein opened 8 years ago
1
Need dynamic strategy for multiple variants

#92 tedgoldstein opened 8 years ago
3
Common normalization process

#91 tedgoldstein closed 7 years ago
2
Surround non-numeric tsv fields with quotes

#90 rcurrie opened 8 years ago
2
Use TIDs instead of data submitter IDs (both new and existing samples)

#89 e-t-k opened 8 years ago
3
Filter outlier analysis results by pathology stain (or any gene set icon)

#88 e-t-k opened 8 years ago
1
pathology stain - tooltips don't render when paging through genes

#87 e-t-k opened 8 years ago
2
Sample group mangement page -- add sample group version number to left side menu

#86 e-t-k closed 8 years ago
3
Can't create a sample group with > 1 data set.

#85 e-t-k closed 8 years ago
1
improve provenance of outlier analysis results / sample group retention

#84 e-t-k opened 8 years ago
1
Manage sample groups page should show applied filters

#83 mokolodi1 opened 8 years ago
0
Introduce gene sets

#82 mokolodi1 closed 8 years ago
2
Figure out correct sample group name & versioning behavior.

#81 e-t-k opened 8 years ago
0
Show sample group versions in outlier analysis

#80 e-t-k closed 8 years ago
1
Show sample group versions in outlier analysis

#79 e-t-k closed 8 years ago
1
[user request] share multiple outlier analyses with 1 click

#78 e-t-k closed 7 years ago
3
Replacing #75 - stanford stain into master

#77 e-t-k closed 8 years ago
0
Add GeneSets, update Forms & GeneSetGroups

#76 mokolodi1 closed 8 years ago
2
Adds icons & tooltips to gene names in outlier analysis output

#75 e-t-k closed 8 years ago
1
Move external tools into docker images

#74 rcurrie closed 7 years ago
1
Remove unused submodules

#73 rcurrie closed 7 years ago
1
Add GSEA Tool

#72 rcurrie closed 7 years ago
1
ExpressionVariance filters -> prod

#71 e-t-k closed 8 years ago
0
Outlier Analysis Results -- provide a detailed TSV for download

#70 e-t-k closed 8 years ago
1
Adds icons to display stanford stain availability next to gene names

#69 e-t-k closed 8 years ago
0
Slow subscription to outlier analysis jobs

#68 mokolodi1 closed 7 years ago
1
Unknown Email addresses in Collaborations Administration

#67 tedgoldstein opened 8 years ago
3
Spelling error: in Collaborations

#66 tedgoldstein closed 8 years ago
1
Spelling error: in Collaborations

#65 tedgoldstein closed 8 years ago
1
If top5% genes is empty (vs missing), should display empty list

#64 e-t-k opened 8 years ago
0
N of 1 Analysis display results complex stuff

#63 tedgoldstein opened 8 years ago
0
Improvements to N of 1 analysis display - simple stuff

#62 tedgoldstein opened 8 years ago
4
Wrangling message: tell users when someone is loading data into a data set

#61 mokolodi1 closed 8 years ago
1
Sample group unfiltered_sample_count always 1

#60 mokolodi1 closed 7 years ago
1
Add link to cBioPortal, bugfix in renameSampleLabel

#59 mokolodi1 closed 8 years ago
1
add renameSampleLabel (#57), fixes #56

#58 mokolodi1 closed 8 years ago
1
Rename sample label

#57 mokolodi1 opened 8 years ago
3
manageObjets.js should be manageObjects.js

#56 tedgoldstein closed 8 years ago
1
Sort by different columns on outlier analysis results page

#55 e-t-k opened 8 years ago
1
Have outlier-analysis output files have unique download filenames

#54 e-t-k opened 8 years ago
1