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Urinx
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alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
Apache License 2.0
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What are the inputs and outputs of the model?
#36
elephantpanda
opened
10 months ago
0
bin_x = np.concatenate([exp_range_n_y // (1 << i) % 2 for i in range(binary_code_bits)], 1)
#35
gongshuai0606
opened
1 year ago
0
KeyError: 'X' in the "feature.py"
#34
gongshuai0606
closed
1 year ago
0
Can AlphaFold2 predict the structure of cyclic peptides?
#33
JustinDoIt
opened
3 years ago
0
feature.py KeyError: 'pseudo_bias'
#32
2efPer
closed
3 years ago
1
Alphafold fails after generating features
#31
raghavshroff
opened
3 years ago
0
Question about model conversion from Tensorflow to PyTorch
#30
jinhee-ginny
closed
3 years ago
1
.rr file
#29
shahik
closed
3 years ago
1
uniclust_30_2018_08_hhsuite.tar.gz size
#28
nicolasfredesfranco
closed
3 years ago
1
Viewing the results of the distogram
#27
ghost
closed
3 years ago
0
Alphafold input data question
#24
Planet-KIM
opened
3 years ago
0
Alphafold other protein dataset question
#23
Planet-KIM
opened
3 years ago
0
How to solute this problem in dataset.py(ProteinDataset method)
#22
Planet-KIM
opened
3 years ago
0
Optimization/ Gradient Descent
#21
tokiinan5
opened
3 years ago
0
Gl/add notebook
#18
GuanyiLi-Craig
closed
3 years ago
1
How can I get the pkl file?
#17
ibr1996
opened
3 years ago
4
exit() at line 164 of feature.py prevents the npy. be saved
#16
nicolasfredesfranco
opened
3 years ago
2
Can I use this code in Windows? or Linux is preferable?
#15
shyamdholakia
opened
3 years ago
0
Problem running octave plmDCA.m test_data/T1019s2.aln
#14
Maj18
opened
3 years ago
1
Include a ligand in the structure
#13
jhrcook
opened
3 years ago
2
PSI-BLAST Database
#12
ryan-224
closed
3 years ago
0
how to get 3D structure of protein?
#11
autodataming
closed
3 years ago
2
feature.sh does not generate .pkl or .tfrec file from T1019s2.seq
#10
sean-lin-tw
opened
4 years ago
13
TypeError: pad() missing 1 required positional argument: 'mode'
#9
sean-lin-tw
closed
4 years ago
1
KeyError: 'X'
#8
Lorenzo360
opened
4 years ago
5
How to use plmDCA.m
#7
KotaroTsuboyama
opened
4 years ago
1
utils module
#6
istolarek
opened
4 years ago
0
BUG in alphafold.py
#5
yuanenming
closed
3 years ago
1
New error TypeError: 'torch.Device' object is not callable
#4
pentadotddot
closed
4 years ago
1
How to use feature.sh and feed already created MSA
#3
pentadotddot
opened
4 years ago
0
README.md typo in command
#2
alprnbg
closed
4 years ago
2
RuntimeError: expected device cuda:0 but got device cpu
#1
pentadotddot
closed
4 years ago
1