Urinx alphafold_pytorch issues

Urinx / alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

Apache License 2.0

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issues

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What are the inputs and outputs of the model?

#36 elephantpanda opened 10 months ago
0
bin_x = np.concatenate([exp_range_n_y // (1 << i) % 2 for i in range(binary_code_bits)], 1)

#35 gongshuai0606 opened 1 year ago
0
KeyError: 'X' in the "feature.py"

#34 gongshuai0606 closed 1 year ago
0
Can AlphaFold2 predict the structure of cyclic peptides?

#33 JustinDoIt opened 3 years ago
0
feature.py KeyError: 'pseudo_bias'

#32 2efPer closed 3 years ago
1
Alphafold fails after generating features

#31 raghavshroff opened 3 years ago
0
Question about model conversion from Tensorflow to PyTorch

#30 jinhee-ginny closed 3 years ago
1
.rr file

#29 shahik closed 3 years ago
1
uniclust_30_2018_08_hhsuite.tar.gz size

#28 nicolasfredesfranco closed 3 years ago
1
Viewing the results of the distogram

#27 ghost closed 3 years ago
0
Alphafold input data question

#24 Planet-KIM opened 3 years ago
0
Alphafold other protein dataset question

#23 Planet-KIM opened 3 years ago
0
How to solute this problem in dataset.py(ProteinDataset method)

#22 Planet-KIM opened 3 years ago
0
Optimization/ Gradient Descent

#21 tokiinan5 opened 3 years ago
0
Gl/add notebook

#18 GuanyiLi-Craig closed 3 years ago
1
How can I get the pkl file?

#17 ibr1996 opened 3 years ago
4
exit() at line 164 of feature.py prevents the npy. be saved

#16 nicolasfredesfranco opened 3 years ago
2
Can I use this code in Windows? or Linux is preferable?

#15 shyamdholakia opened 3 years ago
0
Problem running octave plmDCA.m test_data/T1019s2.aln

#14 Maj18 opened 3 years ago
1
Include a ligand in the structure

#13 jhrcook opened 3 years ago
2
PSI-BLAST Database

#12 ryan-224 closed 3 years ago
0
how to get 3D structure of protein?

#11 autodataming closed 3 years ago
2
feature.sh does not generate .pkl or .tfrec file from T1019s2.seq

#10 sean-lin-tw opened 4 years ago
13
TypeError: pad() missing 1 required positional argument: 'mode'

#9 sean-lin-tw closed 4 years ago
1
KeyError: 'X'

#8 Lorenzo360 opened 4 years ago
5
How to use plmDCA.m

#7 KotaroTsuboyama opened 4 years ago
1
utils module

#6 istolarek opened 4 years ago
0
BUG in alphafold.py

#5 yuanenming closed 3 years ago
1
New error TypeError: 'torch.Device' object is not callable

#4 pentadotddot closed 4 years ago
1
How to use feature.sh and feed already created MSA

#3 pentadotddot opened 4 years ago
0
README.md typo in command

#2 alprnbg closed 4 years ago
2
RuntimeError: expected device cuda:0 but got device cpu

#1 pentadotddot closed 4 years ago
1