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ViennaRNA
/
forgi
An RNA manipulation library.
GNU General Public License v3.0
51
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30
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Pip install failed on Python 3.11
#55
GabLoyer
closed
3 months ago
3
fgb.BulgeGraph missing 2 required positional arguments: 'graph_construction' and 'seq_obj'
#54
BioITWorker
opened
10 months ago
0
fvm.plot_rna(): nan values in annot_pos cause plotting errors
#53
eugenechow
opened
11 months ago
0
fix residue order for nx graph
#52
iranovianti
closed
1 year ago
1
Junctions generate not only regular multiloops but also other structures
#51
Rimasss
opened
1 year ago
0
Show basepairs and enable choosing colors for basepairs when color variable is set to True
#50
dino-prenc
closed
1 year ago
0
Show basepairs and enable choosing colors for basepairs when color variable is set to True
#49
gprenc
closed
1 year ago
0
Improved performance of creating BulgeGraph
#48
domen13
closed
1 year ago
2
Fix Mapping importing from collection
#47
sunrisewestern
closed
1 year ago
1
python 3.10 fix
#46
desiro
closed
1 year ago
1
pip install fails
#45
swingingsimian
closed
1 year ago
2
Cannot visualize RNA co-folded structures
#44
itamarwe
opened
2 years ago
0
Visualizing RNA duplexes
#43
itamarwe
closed
2 years ago
0
Problem encountered: to_neato_string()
#42
stevewu2001
opened
2 years ago
0
Secondary structure with MC-annotate
#41
mandar5335
opened
2 years ago
0
Use Mapping from collection.abc
#40
GabLoyer
closed
1 year ago
2
RuntimeWarning: invalid value encountered in true_divide
#39
afandiadib
opened
3 years ago
1
missing link in structure
#38
lbugnon
closed
4 years ago
0
I can't visualize RNA with color
#37
Shunsuke-1994
opened
4 years ago
0
ModuleNotFoundError: No module named 'RNA'
#36
MvanderGragt
opened
4 years ago
7
Pickle Error
#35
bzudi
opened
5 years ago
0
track base probabilities
#34
bzudi
closed
5 years ago
1
Get neighbors of element in specified range
#33
bzudi
closed
5 years ago
3
Can fixed dependencies be loosened?
#32
croth1
closed
6 years ago
2
GraphConstructionError: Cannot set sequence. Illegal character in string when setting BulgeGraph sequence
#31
dmnfarrell
closed
5 years ago
7
PDB REMARK 350 (multiple symmetric chains)
#30
Bernhard10
opened
6 years ago
0
Possible small typo
#29
ghost
closed
6 years ago
1
Increase compatibility with windows
#28
Bernhard10
closed
6 years ago
0
Running on Windows
#27
irenekb
closed
6 years ago
1
Small Issues
#26
irenekb
closed
6 years ago
1
fix setup.py
#25
Bernhard10
closed
6 years ago
0
Remove intermediate 'aux' hierarchy level.
#24
Bernhard10
closed
6 years ago
0
release date 1.0?
#23
budach
closed
6 years ago
2
Main README at forgi site: https://github.com/ViennaRNA/forgi - is forgi part of ViennaRNA?
#22
ghost
closed
6 years ago
1
Small improvements
#21
irenekb
closed
6 years ago
0
dotbracket_to_bulge_graph.py | graph_to_neato.py
#20
irenekb
closed
7 years ago
0
Do we handle insertion codes correctly?
#19
Bernhard10
closed
5 years ago
2
How to handle pdb-files with missing ATOM records?
#18
Bernhard10
closed
5 years ago
6
Is hausdorff projection necessary for basic energy evaluation?
#17
pkerpedjiev
closed
7 years ago
1
Fix `get_position_in_element`
#16
Bernhard10
closed
7 years ago
2
When no stats are found, an UnboundLocalError can be raised instead of a meaningful error.
#15
Bernhard10
closed
8 years ago
0
Are angle types the correct way to identify pseudoknots?
#14
Bernhard10
closed
5 years ago
1
Pull content from cytvec over to vector.py and get rid of cytvec?
#13
Bernhard10
closed
7 years ago
1
Do we need subgraphs from BulgeGraph and CoarseGrainRNA
#12
Bernhard10
closed
7 years ago
0
Find a more consistent terminology
#11
Bernhard10
opened
8 years ago
3
Consolidate find_bulge_loop, shortest_bg_loop and find_multiloop_loops somehow.
#10
Bernhard10
closed
5 years ago
3
Support python 3
#9
Bernhard10
closed
7 years ago
1
Bulge graph from_fasta_text should be improved
#8
Bernhard10
closed
7 years ago
2
Unit tests for shortest_path and get_stem_edge
#7
tcarlile
closed
8 years ago
2
Fix to shortest_path() bug
#6
tcarlile
closed
8 years ago
0
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