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VirtualFlyBrain
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VFB_owl
A repository for VFB owl files and the code that generates them
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Bump mysql-connector-java from 5.1.26 to 8.0.28
#53
dependabot[bot]
opened
2 years ago
0
Bump postgresql from 9.3-1102-jdbc4 to 42.2.25
#52
dependabot[bot]
opened
2 years ago
0
[Snyk] Security upgrade mysql:mysql-connector-java from 5.1.26 to 8.0.28
#51
snyk-bot
opened
2 years ago
0
Bump mysql-connector-java from 5.1.26 to 8.0.16
#50
dependabot[bot]
closed
2 years ago
1
Not displaying relationships from EC axioms in loaded ontologies (e.g. DL1 adPN doesn't display relationship to DL1 glomerulus).
#49
dosumis
closed
4 years ago
0
Update vfb_ext.owl
#48
dosumis
opened
5 years ago
0
Cell cluster should be an anatomical entity
#47
dosumis
opened
5 years ago
0
Review VFB.owl generated by scala by testing in pdb & on VFB 2.0
#46
dosumis
closed
5 years ago
3
scala neo2OWL: bug in definition generation => blank defs for some individuals
#45
dosumis
closed
6 years ago
1
AberOWL to OWLERY examples
#44
matentzn
closed
6 years ago
0
move to dev
#43
Robbie1977
closed
6 years ago
0
making Owl from neo the default
#42
Robbie1977
closed
6 years ago
0
Schema issue: we need a standard flag for cases where iri of entity can be used for linkout.
#41
dosumis
opened
6 years ago
0
Roll OWL file with reference images for use by OLS
#40
dosumis
opened
6 years ago
1
OLS: Specify linkouts to VFB (& FlyBase)
#39
dosumis
opened
6 years ago
3
Probable issue with OWLAPI version is pipeline testing
#38
Robbie1977
closed
6 years ago
8
Reproductive terms and dev stages in female organism parts query
#37
mmc46
closed
6 years ago
2
Annotations of some fru neurons need correcting
#36
mmc46
opened
7 years ago
11
LCN12 annotation
#35
dosumis
closed
6 years ago
10
New OWL gen scripts using SCOWL
#34
dosumis
closed
6 years ago
3
Incorrect classification for PNs
#33
mmc46
closed
6 years ago
3
Incorrect definitions for individuals
#32
mmc46
closed
6 years ago
6
Seems odd that adult brain is appearing as parent class
#31
Robbie1977
opened
8 years ago
4
Remove expression etc if no data
#30
dosumis
closed
8 years ago
2
Version PURL screw-up
#29
dosumis
closed
7 years ago
3
As a user, I want to see clear information about how a domain on a template is defined in order to judge whether i trust it.
#28
dosumis
closed
6 years ago
2
Write test for IRIs sharing short_form
#27
dosumis
opened
8 years ago
2
Review annotation mapping table, fill in gaps
#26
dosumis
closed
6 years ago
6
Move KB persistence from MySQL to Neo4J
#25
dosumis
closed
6 years ago
7
Neo4J DBs
#24
dosumis
closed
6 years ago
2
Version IRI changed
#23
Robbie1977
closed
8 years ago
1
Set up Jenkins job to pull content from FlyBase to neo4J
#22
dosumis
opened
8 years ago
2
Set up Jenkins job to pull missing content from OWL (Jython) to neo4j
#21
dosumis
closed
7 years ago
12
Set up Jenkins job to populate Neo4J DB
#20
dosumis
closed
6 years ago
0
Make OWL ind release with expression patterns + annotation of expression
#19
dosumis
closed
6 years ago
0
Duplicate tree entry
#18
Robbie1977
closed
6 years ago
1
Trace misclassification of small number of individual neurons as ALad1 neuroblast
#17
dosumis
closed
9 years ago
1
Investigate packaging release cycle jython scripts as jars via maven
#16
dosumis
closed
6 years ago
1
Improve test cases in unit tests for lmb_fc_tools DB facing tests
#15
dosumis
closed
6 years ago
1
Convert tables to InnoDB engine
#14
dosumis
closed
8 years ago
2
New features for lmb_fc_tools
#13
dosumis
closed
6 years ago
2
map DoOR chemicals to ChEBI + owl model of mapping
#12
dosumis
opened
9 years ago
8
mavenise VFB_owl build
#11
dosumis
closed
6 years ago
12
Convert VFB ind release to shell script to make
#10
dosumis
closed
6 years ago
2
Missing individual VFB_00001330
#9
Robbie1977
closed
9 years ago
2
Fix image ind generation
#8
dosumis
closed
6 years ago
0
Use unique colours for anatomy
#7
Robbie1977
closed
6 years ago
1
treeContent.jso generation from JFRC template should use right side domain IDs only
#6
dosumis
closed
10 years ago
1
Set up Jenkins jobs for automated update and checks of OWL files & DB
#5
dosumis
closed
8 years ago
4
Store BrainName stack metadata in DB
#4
dosumis
opened
10 years ago
0
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