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WGLab
/
LongReadSum
MIT License
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Update README information
#58
jonperdomo
closed
1 week ago
0
--help output
#57
gchevignon
closed
1 week ago
1
Add RNA-Seq TIN QC support
#56
jonperdomo
closed
2 weeks ago
5
Preprint revisions
#55
jonperdomo
closed
2 months ago
1
Add TIN QC for RNA-seq data
#54
jonperdomo
closed
2 weeks ago
0
52 base modification tags
#53
jonperdomo
closed
2 months ago
7
Add QC for BAM with base modification tags
#52
jonperdomo
closed
2 months ago
1
29 add pod5 support
#51
jonperdomo
closed
4 months ago
1
Fix conda build
#50
jonperdomo
closed
4 months ago
0
48 fix fast5 errors with guppy and dorado
#49
jonperdomo
closed
5 months ago
2
Fix FAST5 errors with Guppy and Dorado
#48
jonperdomo
closed
5 months ago
0
Add RRMS support
#47
jonperdomo
closed
1 year ago
1
Add RRMS support
#46
jonperdomo
closed
1 year ago
0
Reduce dependencies
#45
jonperdomo
closed
1 year ago
1
Issue with running LongReadSum
#44
doshirLV
closed
1 year ago
7
Update logging to file
#43
jonperdomo
closed
1 year ago
0
Fix missing NM tag error
#42
jonperdomo
closed
1 year ago
0
36 fix threading memory leak
#41
jonperdomo
closed
1 year ago
1
Updates from bioconda PR testing
#40
jonperdomo
closed
1 year ago
1
Fix format error
#39
jonperdomo
closed
1 year ago
0
Remove faulthandler dependency
#38
jonperdomo
closed
1 year ago
0
Fix bioconda package build
#37
jonperdomo
closed
1 year ago
0
Fix threading memory leak
#36
jonperdomo
closed
1 year ago
0
Add VBZ plugin
#35
jonperdomo
closed
1 year ago
0
32 bioconda package
#34
jonperdomo
closed
1 year ago
0
Mismatched bases error
#33
jonperdomo
closed
1 year ago
1
Create bioconda package
#32
jonperdomo
closed
1 year ago
0
Add percent identity
#31
jonperdomo
opened
1 year ago
0
Add Nanopore active pore plots
#30
jonperdomo
opened
1 year ago
0
Add POD5 support
#29
jonperdomo
closed
4 months ago
1
Add support for other FAST5 formats
#28
jonperdomo
closed
1 year ago
2
Add multi-read and VBZ compression FAST5 support
#27
jonperdomo
closed
1 year ago
1
25 add plot style parameters
#26
jonperdomo
closed
1 year ago
0
Add plot style parameters
#25
jonperdomo
closed
1 year ago
0
Add sequencing depth and coverage QC
#24
jonperdomo
opened
1 year ago
0
15 fix fastq bam outputs
#23
jonperdomo
closed
1 year ago
0
cite publication
#22
danielecook
closed
1 year ago
2
Add QC flags
#21
jonperdomo
opened
1 year ago
0
18 Add fast5 signal summary statistics
#20
jonperdomo
closed
1 year ago
8
ENH: Add Docker installation instructions to README
#19
jonperdomo
closed
2 years ago
0
Add FAST5 signal summary statistics
#18
jonperdomo
closed
1 year ago
0
Update basecalling error rate implementation
#17
jonperdomo
closed
1 year ago
1
BUG: Fix FAST5, sequencing_summary.txt outputs and refactor project structure
#16
jonperdomo
closed
2 years ago
7
Check the BAM, FASTQ, and FAST5 N50 and mapped base implementations
#15
jonperdomo
closed
1 year ago
1
Add MultiQC support
#14
jonperdomo
opened
2 years ago
0
No outputs for FAST5, sequencing_summary.txt
#13
jonperdomo
closed
2 years ago
3
Set up pytest workflow for basic statistics
#12
jonperdomo
closed
2 years ago
1
ENH: Add build testing action
#11
jonperdomo
closed
2 years ago
0
Add Docker image
#10
jonperdomo
closed
2 years ago
1
Implement basic statistics testing action
#9
jonperdomo
closed
2 years ago
11
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