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WormBase
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ACKnowledge
Author Curation to Knowledgebases
MIT License
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some gk alleles not recognized
#66
draciti
closed
5 years ago
5
Some species are almost always extracted
#67
valearna
closed
5 years ago
5
add question mark with info about the extraction algorithm
#61
valearna
closed
5 years ago
5
whitespaces added arounf dashes for some papers during fulltext extraction
#57
valearna
closed
5 years ago
2
wrong species extracted
#60
valearna
closed
5 years ago
3
extract papers from production pipeline for testing
#64
valearna
closed
5 years ago
7
Strategy for beta testing with authors
#88
vanaukenk
closed
5 years ago
3
Genes for 53123
#41
vanaukenk
closed
5 years ago
1
Species for 53123
#50
vanaukenk
closed
5 years ago
1
Strain match for 50093
#42
vanaukenk
closed
5 years ago
1
Species matches for 50093
#43
vanaukenk
closed
5 years ago
0
Homo sapiens and mouse shouldn't be extracted from paper 00053873
#55
valearna
closed
5 years ago
2
Homo sapiens shouldn't be identified in paper 00049183
#56
valearna
closed
5 years ago
1
'Strain' keyword found in strains identified in the paper 00049183
#39
valearna
closed
5 years ago
4
extract fulltext from pdfs without using textpressocentral API
#44
valearna
closed
5 years ago
1
create a digest email for Cecilia with email addresses extracted from the papers and not linked to any person ID
#100
valearna
closed
3 years ago
2
retrieve person ID from author email address
#46
valearna
closed
5 years ago
2
keep track of afp table history from web form
#51
valearna
closed
5 years ago
1
keep track of afp table history
#37
valearna
closed
5 years ago
0
save afp_species list in pap_species
#38
valearna
closed
5 years ago
7
save genes in pap_gene and species in pap_species when author saves them in afp
#69
valearna
closed
5 years ago
2
create blacklist of species to be ignored by the pipeline
#93
valearna
closed
5 years ago
1
Add checkbox for review papers
#111
valearna
closed
2 years ago
2
send monthly notifications for new data submitted by authors to curators
#98
valearna
closed
5 years ago
4
Protein activity checkbox in curation status does not 'check' WBPaper00053873
#35
draciti
closed
5 years ago
10
protein activity box flagged positive (should be negative by default)
#34
draciti
closed
5 years ago
2
Check behavior for new author flags for Gene model correction/update
#33
vanaukenk
closed
5 years ago
5
show a summary of the form to the author at the end of the submission process
#110
valearna
opened
6 years ago
1
send email to Daniela and Kimberly when authors submit all data through the form
#36
valearna
closed
5 years ago
2
"Save and continue" button does not trigger any action
#5
draciti
closed
5 years ago
3
allow clicking 'finish and submit' only if all other sections are completed
#32
valearna
closed
5 years ago
1
move update contact info and micropub to comments and submit
#30
valearna
closed
5 years ago
3
change saved values for checkboxes
#49
valearna
closed
5 years ago
0
remove round brackets from strains in strain list (there is no ID)
#31
valearna
closed
5 years ago
1
change tooltip text for svm and tpc powered icons
#28
valearna
closed
5 years ago
0
simplified form for review articles
#109
valearna
opened
6 years ago
2
filter out papers that are not primary
#24
valearna
closed
5 years ago
1
increase font size
#25
valearna
closed
5 years ago
1
add link to pubmed page for papers
#27
valearna
closed
5 years ago
1
add wormbase link with logo in header
#48
valearna
closed
5 years ago
3
change "anything else?" widget name to "Additional data and comments"
#29
valearna
closed
5 years ago
2
add question mark to site and time of action
#26
valearna
closed
5 years ago
2
calculate statistics for a large sample of papers
#73
valearna
closed
5 years ago
6
rank genes by number of occurrences
#107
draciti
closed
4 years ago
0
Add another paper for testing
#23
draciti
closed
5 years ago
2
hsf-1 not extracted
#14
draciti
closed
5 years ago
2
same gene extracted 2x- WBPaper00054192
#21
draciti
closed
5 years ago
1
WBPaper00053739- drosophila not extracted
#18
draciti
closed
5 years ago
4
SMV results not matching- WBPaper00054192
#19
draciti
closed
5 years ago
4
add wormbase header and footer
#108
valearna
closed
4 years ago
2
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