issues
search
aertslab
/
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Other
186
stars
29
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Generating a Umap with eRegulon AUC does not produce proper clusters
#310
redvoidling
opened
8 months ago
2
scenicplus object file request due to run_scenicplus function being extremely slow
#309
elhaam
closed
8 months ago
2
Output scenicplus
#308
SteveTur
closed
8 months ago
1
run_scenicplus Skips Steps
#304
MVemon
opened
9 months ago
0
RuntimeError from pbmc tutorial ( export_pseudobulk)
#303
Tu4n-ph4m
closed
8 months ago
10
Unable to run pbmc tutorial ( export_pseudobulk)
#302
Tu4n-ph4m
closed
9 months ago
1
run_scenicplus stops running midway
#300
peggiechien
opened
9 months ago
15
AttributeError in export_pseudobulk with Python 3.8
#299
elhaam
closed
9 months ago
2
TypeError export_pseudobulk
#298
skoturan
closed
9 months ago
3
export_pseudobulk() does not work
#297
wgao688
closed
9 months ago
38
Chromsizes URL
#296
SteveTur
opened
9 months ago
4
Mis-labelled motifs ?
#295
JaanaB1
opened
9 months ago
1
pycisTarget - TypeError: object of type 'int' has no len()
#293
simozhou
closed
9 months ago
1
'unsupported operand type' error in import export_pseudobulk
#292
cbiagii
closed
9 months ago
2
Perturbation: calculating shift along PCAs
#291
mason-sweat1
closed
2 months ago
1
MemoryError when running impute_accessibility
#290
liouhy
closed
8 months ago
4
After running GSEA. I got stuck on getting the regulons.
#288
rogercasalsfr
opened
10 months ago
4
plot Regulon different in plot_AUC_given_ax and sc.pl.umap
#287
LILI-0000-0002-8173-7367
opened
10 months ago
7
ValueError: Length mismatch: Expected axis has 0 elements, new values have 3 elements
#285
Sudheshna30
opened
10 months ago
2
RunTimeError with export_pseudobulk
#284
mairamirza
closed
10 months ago
3
An incorrect usage of a regular expression caused the quality control of PBMC tutorials to fail
#283
JohnWang1997
opened
10 months ago
0
A Parallel calculation error with joblib when execute the export_pseudobulk function
#282
JohnWang1997
opened
10 months ago
0
Issue with Cytoscape output file
#281
alirosen
opened
10 months ago
2
run_scenicplus errors with differnet cpu settings.
#280
redvoidling
closed
10 months ago
1
Error with cytoscape file
#279
alirosen
closed
10 months ago
0
export_pseudobulk no bed files
#277
LILI-0000-0002-8173-7367
opened
11 months ago
7
change get_feature_names to get_feature_names_out
#276
SeppeDeWinter
closed
11 months ago
0
encountering issues with export_pseudobulk and so on.
#275
Jinkyustar
opened
11 months ago
1
Run GSEA hanging for hours
#274
rogercasalsfr
opened
11 months ago
1
Methods_benchmark
#272
master-XS
closed
11 months ago
1
Unable to run run_scenicplus with GRCz11: get_search_space
#271
DmitriiSeverinov
opened
11 months ago
1
run_scenicplus error
#270
poddan01
closed
11 months ago
1
from scenicplus.wrappers.run_pycistarget import run_pycistarget doesn't work
#269
SteveTur
closed
10 months ago
7
Plot_eRegulon error
#268
MozzyCow
opened
11 months ago
2
AttributeError: ('PyRanges object has no attribute', 'Overlap')
#267
twoneu
closed
11 months ago
2
Error whilst Returning normalized TSS coverage matrix per barcode
#264
MozzyCow
closed
11 months ago
3
Can you restart the pipeline from a given step?
#263
mason-sweat1
closed
11 months ago
3
Problem with the exported_pseudobulk function
#262
flaviagann
opened
1 year ago
5
Numba: Attempted to fork from a non-main thread, the TBB library may be in an invalid state in the child process.
#261
alexlenail
closed
12 months ago
2
create_SCENICPLUS_object() metadata_cell keyError
#260
alexlenail
opened
1 year ago
2
Help with Kernal dead
#259
Chrisdoan9
opened
1 year ago
9
run_pycistarget DEM error
#258
avdl25
opened
1 year ago
2
Numba Issue
#256
mayowaakinwale
closed
1 year ago
1
error for export_pseudobulk
#255
leogg738
opened
1 year ago
2
Bug while running calculate_regions_to_genes_relationships
#254
CYorick
opened
1 year ago
4
No objects to concatenate
#253
alexlenail
closed
1 year ago
4
Help with AssertionError: Database "{fname}" doesn't exist.
#252
Chrisdoan9
opened
1 year ago
2
ValueError: y should be a 1d array, got an array of shape (56842, 2) instead.
#251
alexlenail
closed
1 year ago
3
SCENIC+ Numba: Attempted to fork from a non-main thread, the TBB library may be in an invalid state in the child process.
#250
YayanFeng55
opened
1 year ago
1
How to load results of loom file into SCENIC+ object?
#248
vckraemer
closed
1 year ago
2
Previous
Next