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aertslab
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scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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plot Regulon different in plot_AUC_given_ax and sc.pl.umap
#287
LILI-0000-0002-8173-7367
opened
5 months ago
7
ValueError: Length mismatch: Expected axis has 0 elements, new values have 3 elements
#285
Sudheshna30
opened
5 months ago
2
RunTimeError with export_pseudobulk
#284
mairamirza
closed
5 months ago
3
An incorrect usage of a regular expression caused the quality control of PBMC tutorials to fail
#283
JohnWang1997
opened
5 months ago
0
A Parallel calculation error with joblib when execute the export_pseudobulk function
#282
JohnWang1997
opened
5 months ago
0
Issue with Cytoscape output file
#281
alirosen
opened
5 months ago
2
run_scenicplus errors with differnet cpu settings.
#280
redvoidling
closed
5 months ago
1
Error with cytoscape file
#279
alirosen
closed
5 months ago
0
export_pseudobulk no bed files
#277
LILI-0000-0002-8173-7367
opened
6 months ago
7
change get_feature_names to get_feature_names_out
#276
SeppeDeWinter
closed
6 months ago
0
encountering issues with export_pseudobulk and so on.
#275
Jinkyustar
opened
6 months ago
1
Run GSEA hanging for hours
#274
rogercasalsfr
opened
6 months ago
1
Methods_benchmark
#272
master-XS
closed
6 months ago
1
Unable to run run_scenicplus with GRCz11: get_search_space
#271
DmitriiSeverinov
opened
6 months ago
1
run_scenicplus error
#270
poddan01
closed
6 months ago
1
from scenicplus.wrappers.run_pycistarget import run_pycistarget doesn't work
#269
SteveTur
closed
6 months ago
7
Plot_eRegulon error
#268
MozzyCow
opened
6 months ago
2
AttributeError: ('PyRanges object has no attribute', 'Overlap')
#267
twoneu
closed
6 months ago
2
Error whilst Returning normalized TSS coverage matrix per barcode
#264
MozzyCow
closed
6 months ago
3
Can you restart the pipeline from a given step?
#263
mason-sweat1
closed
7 months ago
3
Problem with the exported_pseudobulk function
#262
flaviagann
opened
7 months ago
5
Numba: Attempted to fork from a non-main thread, the TBB library may be in an invalid state in the child process.
#261
alexlenail
closed
7 months ago
2
create_SCENICPLUS_object() metadata_cell keyError
#260
alexlenail
opened
7 months ago
2
Help with Kernal dead
#259
Chrisdoan9
opened
7 months ago
9
run_pycistarget DEM error
#258
avdl25
opened
7 months ago
2
Numba Issue
#256
mayowaakinwale
closed
7 months ago
1
error for export_pseudobulk
#255
leogg738
opened
7 months ago
2
Bug while running calculate_regions_to_genes_relationships
#254
CYorick
opened
8 months ago
4
No objects to concatenate
#253
alexlenail
closed
7 months ago
4
Help with AssertionError: Database "{fname}" doesn't exist.
#252
Chrisdoan9
opened
8 months ago
2
ValueError: y should be a 1d array, got an array of shape (56842, 2) instead.
#251
alexlenail
closed
8 months ago
3
SCENIC+ Numba: Attempted to fork from a non-main thread, the TBB library may be in an invalid state in the child process.
#250
YayanFeng55
opened
8 months ago
1
How to load results of loom file into SCENIC+ object?
#248
vckraemer
closed
7 months ago
2
Error with plot_topic
#247
Chrisdoan9
opened
8 months ago
4
ValueError: Sample larger than population or is negative
#246
Citugulia40
closed
7 months ago
8
menr.pkl: _pickle.UnpicklingError: pickle data was truncated
#244
alexlenail
closed
8 months ago
1
numpy.core._exceptions.MemoryError
#241
YayanFeng55
closed
8 months ago
3
heatmap_dotplot() in the development branch
#239
pchiang5
closed
8 months ago
1
make a Dockerhub image available
#238
simozhou
opened
8 months ago
0
DEM analysis error: 'dict_keys' object is not subscriptable
#237
jhong26
closed
9 months ago
1
installation error (pybedtools)
#235
jklvrt
closed
9 months ago
3
[BUG] Error in plotting heatmap
#233
josephineyates
opened
9 months ago
1
Few results for menr.pkl in the 10x multiome pbmc Tutorial
#232
bitcometz
opened
9 months ago
4
ArrowMemoryError: malloc of size 2417947094267967360 failed
#230
pchiang5
closed
9 months ago
4
How to work with multiple fragment files?
#228
xgaoo
closed
9 months ago
0
compute_qc_stats got an unexpected keyword argument 'use_polars'
#227
jesswhitts
closed
9 months ago
5
compute_qc_stats error
#226
MohammadIzadi
opened
9 months ago
5
normalize_scores() process is killed
#225
elesanesc
closed
9 months ago
3
Peakcalling CalledprocessError
#222
kjiiii
closed
5 months ago
20
Consider publishing the package to PyPI ?
#220
jkanche
opened
9 months ago
1
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