aics-int microscope_automation issues

aics-int / microscope_automation

Automation software for the AICS Microscopes.

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issues

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[Security] Workflow test-and-lint.yml is using vulnerable action actions/checkout

#73 Ale0x78 opened 2 years ago
0
[Security] Workflow test-and-lint.yml is using vulnerable action actions/checkout

#71 igibek opened 2 years ago
0
[Security] Workflow build-docs.yml is using vulnerable action actions/checkout

#69 Freakston opened 2 years ago
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Remove multi pref

#68 yrkim98 closed 3 years ago
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Bugfix/hide safe area

#67 fletchapin closed 3 years ago
0
Package ZIP

#66 fletchapin closed 3 years ago
0
actions/install2

#65 fletchapin closed 3 years ago
0
actions/install

#64 fletchapin closed 3 years ago
0
Moved CONTRIBUTING to Overview section

#63 fletchapin closed 3 years ago
0
bugfix/plot-safe-areas

#62 fletchapin closed 3 years ago
0
Create daily folder in setup

#61 fletchapin closed 3 years ago
0
ENH: Make starting instructions more clear

#60 fletchapin opened 3 years ago
0
docs/install

#59 fletchapin closed 3 years ago
1
ENH: Make matplotlib movement plot optional

#58 fletchapin closed 3 years ago
2
BUG: Software Crashes when set_autofocus is True

#57 fletchapin opened 3 years ago
0
hotfix/pyinstaller-dependency

#56 fletchapin closed 3 years ago
0
ENH: Have GH Actions release microscope_automation.zip

#55 fletchapin closed 3 years ago
0
Feature/installer

#54 fletchapin closed 3 years ago
0
BUG: y-coordinates flipped compared to physical hardware when plotting safe areas

#53 fletchapin closed 3 years ago
0
DOC: Document process to create dummy_tile_positions.czsh

#52 fletchapin opened 3 years ago
1
ENH: Create GUI which interacts with YAML preferences files

#51 fletchapin opened 3 years ago
0
prefs/manual_test

#50 fletchapin closed 3 years ago
0
Bugfix/segmentation

#49 fletchapin closed 3 years ago
0
BUG: Error when live.czi is open and live mode is requested

#48 fletchapin opened 3 years ago
0
Bugfix/write ZEN tiles

#47 fletchapin closed 3 years ago
0
bugfix/macros

#46 fletchapin closed 3 years ago
0
refactor/file-structure

#45 fletchapin closed 3 years ago
0
TEST: Move test functions for ZEN Blue from connect_zen_blue_dummy.py to using pytest mock objects

#44 fletchapin opened 3 years ago
1
REF: Overhaul file structure to better accommodate microservices

#43 fletchapin closed 3 years ago
0
BUG: Software crashes if no dummy_tile_positions_zsd1.czsh exists

#42 wiegraebe closed 3 years ago
0
BUG: Handle missing positions_output_a file

#41 wiegraebe closed 3 years ago
1
BUG: Allow interactive position picking even if segmentation did not return positions

#40 wiegraebe closed 3 years ago
2
BUG: z-position not updated during recovery from crash danger

#39 wiegraebe opened 3 years ago
0
BUG: Handle missing keys in preferences file for macros

#38 wiegraebe closed 3 years ago
1
BUG: When ZEN software was first started error message "Experiment none does not exist'

#37 wiegraebe opened 3 years ago
2
ENH: Handle yaml errors in preference files

#36 wiegraebe opened 3 years ago
1
BUG: Start position list conversion with 1 instead of 0

#35 wiegraebe closed 3 years ago
0
BUG: change `xZero` and `yZero` to `x_zero` and `y_zero`

#34 wiegraebe closed 3 years ago
0
BUG: Handle if image is not two dimensional

#33 wiegraebe closed 3 years ago
1
BUG: Catch error if image has more than two dimensions

#32 wiegraebe closed 3 years ago
1
REF: Refactor segment_wells

#31 wiegraebe opened 3 years ago
1
Logging fixed

#30 fletchapin closed 3 years ago
0
BUG: If macro is not found app continues without error message

#29 wiegraebe closed 3 years ago
4
ENH: Allow user messages as experiment in preferences file

#28 wiegraebe opened 3 years ago
1
BUG: Missing Daily folder crashes system when trying to save image

#27 wiegraebe closed 3 years ago
3
ENH: handle "Microscope not ready error" in scan_single_ROI

#26 wiegraebe opened 3 years ago
1
REF: Refactor all verbose/non-verbose messages into helper function

#25 wiegraebe opened 3 years ago
1
Added pywin32 and pinned maximum versions in setup.py

#24 fletchapin closed 3 years ago
0
DOC: Installation instructions

#23 fletchapin closed 3 years ago
0
BUG: Software always uses ZEN Blue Dummy

#22 fletchapin closed 3 years ago
0