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airr-standards
AIRR Community Data Standards
https://docs.airr-community.org
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Current errors in R-CMD-check action
#600
williamdlees
closed
2 years ago
2
Coordinate with IgBlast to support AIRR germline set format
#599
schristley
closed
1 year ago
10
Can the C57BL/6 IGH mouse germline set be given gene and subgroup designations?
#598
schristley
closed
2 years ago
2
Add documentation for ADC API requirements
#597
bcorrie
closed
2 years ago
1
`sequence_id`. Is this only for internally linking in `AlleleDescription`?
#596
jyli22
closed
2 years ago
0
what is the expected workflow/use case for subject-specific germline sets?
#595
schristley
closed
2 years ago
9
Multiple schema files
#594
williamdlees
closed
2 years ago
6
Germline doc
#593
williamdlees
closed
2 years ago
17
Update documentation to state that the -call fields in a Rearrangement should cite the label field in an AlleleDescription
#592
williamdlees
closed
12 months ago
3
Tests for GermlineSet should check that there is only one AlleleDescription for each allele in the list
#591
williamdlees
opened
2 years ago
3
Field consistency check for RearrangedSequence
#590
javh
closed
1 year ago
5
How to approach identifier provenance
#589
javh
closed
1 year ago
49
Added content type to curl post queries
#588
bcorrie
closed
2 years ago
5
collection_time_point_relative and units
#587
bcorrie
closed
1 year ago
3
Clone updates
#586
bcorrie
closed
2 years ago
14
R language support - validator does not validate the type of lists
#585
williamdlees
opened
2 years ago
0
Python language support - Treatment of json objects in Python 2
#584
williamdlees
closed
1 year ago
5
Make ADC V1.1 release
#583
schristley
closed
1 year ago
3
management and conversion of schema changes for users
#582
schristley
opened
2 years ago
3
Germline lang
#581
williamdlees
closed
2 years ago
60
Update docs for keywords_study
#580
bcorrie
closed
1 year ago
2
Make ADC V1.2 release
#579
schristley
closed
2 years ago
18
RepertoireGroup refinements
#578
bcorrie
opened
2 years ago
36
update documentation
#577
schristley
closed
2 years ago
0
ADC curl POST commands in docs need a header
#576
bcorrie
closed
2 years ago
2
Remove MiXCR from Rearrangement support list
#575
bussec
closed
2 years ago
0
Updates to cell object as per #409
#574
bcorrie
closed
2 years ago
16
Grouping of MHC genotype information
#573
bussec
closed
2 years ago
9
Date format for Germline related objects
#572
bussec
closed
2 years ago
1
Define J gene donor splice site
#571
bussec
closed
2 years ago
1
make 1.3.2 release
#570
schristley
closed
1 year ago
1
Study keywords update
#569
bcorrie
closed
2 years ago
2
Germline labels
#568
williamdlees
closed
2 years ago
7
mechanism to record raw GEX sequencing files attached to a repertoire?
#567
schristley
opened
2 years ago
17
Minor fixes, and fix to the Sphinx build
#566
williamdlees
closed
2 years ago
6
Can I ask and request why does MiXCR still does not support AIRR standards?
#565
shuchaa
closed
1 year ago
2
add sequencing_data_pid and index file
#564
schristley
closed
2 years ago
35
do we use the decentralized identifiers spec and/or parts of it for our needs, or something simpler?
#563
schristley
opened
2 years ago
3
what's the scope of the identifiers in the germline schema objects?
#562
schristley
closed
1 year ago
8
coding_sequence_identifier is missing from AlleleDescription
#561
schristley
closed
2 years ago
1
germline doc is missing from RTD
#560
schristley
closed
2 years ago
0
How will versioning work for AlleleDescription?
#559
schristley
closed
1 year ago
3
Change germline definitions for consistency
#558
williamdlees
closed
2 years ago
0
gene_subgroup, subgroup_designation, allele_designation in AlleleDescription
#557
schristley
closed
2 years ago
0
species should be ontology in AlleleDescription and GermlineSet
#556
schristley
closed
2 years ago
1
how to know if a repository supports an ADC extension?
#555
schristley
closed
6 months ago
2
Genotype documented_allele VS delete_gene
#554
bcorrie
closed
2 years ago
2
Use CURIEs to link Germline to Repertoire/Rearrangement
#553
bcorrie
opened
2 years ago
17
Create a `Contributor` object to use throughout the schema
#552
bussec
closed
5 months ago
23
physical quantity format
#551
schristley
closed
5 months ago
34
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