alexenge hu-neuro-pipeline issues

alexenge / hu-neuro-pipeline

Single trial EEG pipeline at the Abdel Rahman Lab for Neurocognitive Psychology, Humboldt-Universität zu Berlin

https://hu-neuro-pipeline.readthedocs.io

MIT License

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issues

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Add MSEC/BESA matrices to ERP CORE download function

#176 alexenge opened 3 weeks ago
0
Use PyPI's new "trusted publisher" for authentication instead of API token

#175 alexenge closed 2 months ago
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Use PyPI's "trusted publishers" for publishing instead of API token

#174 alexenge closed 2 months ago
0
Improve bits of text in the UCAP example

#173 alexenge closed 2 months ago
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Warn but continue when epochs selected for averaging are empty (e.g., all epochs were rejected)

#172 alexenge closed 4 months ago
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Warn but continue if epochs selected with `average_by` is empty

#171 alexenge closed 4 months ago
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Consider adding hu-neuro-pipeline to NITRC

#170 arnodelorme opened 6 months ago
1
Small improvements to the installation instructions

#169 alexenge closed 6 months ago
0
Epochs that are `'TOO_SHORT'` to fit into the recording get dropped from epochs and log files with a warning

#168 alexenge closed 6 months ago
0
Integer coercion warning now only shows up if `ica_n_components` isn't `int` already

#167 alexenge closed 6 months ago
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Epochs dropped as `'TOO_SHORT'` or `'NO_DATA'` cause log file merging errors

#166 alexenge closed 6 months ago
0
Coercion warning about `ica_n_components` is displayed even if it is already `int`

#165 alexenge closed 6 months ago
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Fix error when trying to save `Path`/`range` to config

#164 alexenge closed 7 months ago
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Error when saving special types (`Path`, `range`) to config

#163 alexenge closed 7 months ago
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Fix error when `.csv` log file is passed as a `pathlib.Path`

#162 alexenge closed 7 months ago
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Error when `log_file` is a `.csv` file as a `pathlib.Path`

#161 alexenge closed 7 months ago
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Ensure that `components['roi']` is always a list

#160 alexenge closed 7 months ago
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Fix error when `components['roi']` is not a nested list

#159 alexenge closed 7 months ago
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Support `pathlib.Path` objects as input and output directories

#158 alexenge closed 7 months ago
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Allow list-like types (not just list) for some input arguments

#157 alexenge closed 7 months ago
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Allow more list-like types instead of just lists for some input arguments

#156 alexenge closed 7 months ago
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Support `pathlib.Path` for input files and output directories

#155 alexenge closed 7 months ago
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Fix import error with new MNE version 1.6.0

#154 alexenge closed 7 months ago
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Importing the pipeline errors with MNE version 1.6.0

#153 alexenge closed 7 months ago
0
Fix some issues in the docs (wrong input arguments, remove tables of content)

#152 alexenge closed 7 months ago
0
Fix missing manifest files that broke the dataset fetchers

#151 alexenge closed 8 months ago
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Make sure manifest files are installed with the package for fetchers

#150 alexenge closed 8 months ago
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Improve dataset fetchers (offline mode, `path` argument, custom list of participants)

#149 alexenge closed 8 months ago
0
MNE 1.5 has re-introduced the error when providing non-existing triggers

#148 alexenge opened 8 months ago
1
Change order of preprocessing steps to follow Steve Luck's suggestions

#147 alexenge opened 8 months ago
1
Add input argument `ref_channels` for custom re-referencing (`'average'` remains the default)

#146 alexenge closed 8 months ago
0
Improve dataset fetchers

#145 alexenge closed 8 months ago
0
Let users choose data path as an argument in UCAP / ERP CORE dataset fetchers

#144 alexenge closed 8 months ago
1
Keep audio and pulse channels that are not in the montage as "misc" type

#143 kirstenstark closed 8 months ago
1
Allow including/excluding trigger combinations instead of individual triggers

#142 alexenge opened 10 months ago
0
Allow users to keep channels that are not in the montage

#141 alexenge closed 8 months ago
0
Fix bad epoch rejection for epochs that already have bad epoch markers (e.g., `NO_DATA`)

#140 alexenge closed 11 months ago
0
Epoch rejection fails if markers are present in the drop log of the epochs (e.g., `NO_DATA`)

#139 alexenge closed 11 months ago
0
Make sure that automatic matching via `triggers_column` works for non-BrainVision data

#138 alexenge closed 11 months ago
0
Make sure that automatic matching via `triggers_column` works for non-BrainVision data

#137 alexenge closed 11 months ago
0
Change default for `ica_n_components` from `0.99` (i.e., 99% explained variance) to `None` (all components, usually number of channels minus one)

#136 alexenge closed 11 months ago
0
Allow setting `ica_n_components` to `None` and make it the new default

#135 alexenge closed 11 months ago
0
Move documentation source files into new `doc/source/` sub-directory

#134 alexenge closed 11 months ago
0
Move source files for documentation into separate `source/` sub-directory

#133 alexenge closed 11 months ago
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Switch to MyST-NB (instead of nbsphinx) for rendering doc examples

#132 alexenge closed 11 months ago
0
Fix bug so that Read the Docs will render the examples again

#131 alexenge closed 11 months ago
0
Add ERP CORE example (processing N400 data in Python) to docs

#130 alexenge closed 11 months ago
0
Rename functions for getting sample datasets (now `datasets.get_ucap()` and `datasets.get_erpcore()`)

#129 alexenge closed 11 months ago
0
Re-factor dataset fetchers

#128 alexenge closed 11 months ago
0
Support processing of non-BrainVision / non-Abdel Rahman Lab data (e.g., ERP CORE data)

#127 alexenge closed 11 months ago
0