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alexstaj
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cutadapt
Automatically exported from code.google.com/p/cutadapt
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Error with preamble and exc_clear
#49
GoogleCodeExporter
closed
9 years ago
2
Error ELFCLASS64
#48
GoogleCodeExporter
closed
9 years ago
6
Weird behavior of CutAdapt -a/-g/-b option
#47
GoogleCodeExporter
closed
9 years ago
9
--wildcard-file throws IndexError: string index out of range
#46
GoogleCodeExporter
closed
9 years ago
3
-g finds and deletes adapter from end of read
#45
GoogleCodeExporter
closed
9 years ago
1
Add multi-threading and a suggested way to increase speed
#44
GoogleCodeExporter
closed
9 years ago
2
overlapping prefix adapters
#43
GoogleCodeExporter
opened
9 years ago
2
Log output to file
#42
GoogleCodeExporter
closed
9 years ago
2
Remove adaptor from 5' end in color-space data
#41
GoogleCodeExporter
closed
9 years ago
3
cutadapt -b crashes
#40
GoogleCodeExporter
closed
9 years ago
2
problem on installation
#39
GoogleCodeExporter
closed
9 years ago
5
Gzip compression in separate process
#38
GoogleCodeExporter
closed
9 years ago
2
Read minimum lengths: Include read names in rest file?
#37
GoogleCodeExporter
closed
9 years ago
2
strict 5' adapter matching
#36
GoogleCodeExporter
closed
9 years ago
12
remove adaptor sequence
#35
GoogleCodeExporter
closed
9 years ago
6
Trimming known adapter pairings
#34
GoogleCodeExporter
opened
9 years ago
2
Enhancement - specify trim sequences in file?
#33
GoogleCodeExporter
closed
9 years ago
2
Add a --too-long option to print too long (by -M) reads to a file instead of discarding
#32
GoogleCodeExporter
closed
9 years ago
2
bam format and stdin/stdout
#31
GoogleCodeExporter
closed
9 years ago
4
don't remove adapters, but mask them
#30
GoogleCodeExporter
closed
9 years ago
2
Sequence and quality different lengths
#29
GoogleCodeExporter
closed
9 years ago
2
input from STDIN stops working when -f option given
#28
GoogleCodeExporter
closed
9 years ago
3
up to version 0.9 *.sequence.txt(.gz) was accepted as input format
#27
GoogleCodeExporter
closed
9 years ago
4
Remove initial or trailing 'N' characters
#26
GoogleCodeExporter
closed
9 years ago
1
Search for adapter at 5' end only
#25
GoogleCodeExporter
closed
9 years ago
4
Add --quiet option to not print the extra information
#24
GoogleCodeExporter
closed
9 years ago
3
make Ns align to any base
#23
GoogleCodeExporter
closed
9 years ago
5
just trim quality
#22
GoogleCodeExporter
closed
9 years ago
7
output file , csfasta and qual
#21
GoogleCodeExporter
closed
9 years ago
3
Send report to STDOUT (instead of STDERR) when output file is specified
#20
GoogleCodeExporter
closed
9 years ago
1
also search for reverse complement of given adapters
#19
GoogleCodeExporter
closed
9 years ago
4
-c: command not found
#18
GoogleCodeExporter
closed
9 years ago
2
description after "+" in FASTQ is not retained
#17
GoogleCodeExporter
closed
9 years ago
1
discard-trimmed option does not seem to work
#16
GoogleCodeExporter
closed
9 years ago
2
[deleted issue]
#15
GoogleCodeExporter
closed
9 years ago
0
paired-end trimming
#14
GoogleCodeExporter
closed
9 years ago
9
better error reporting on parse errors
#13
GoogleCodeExporter
closed
9 years ago
8
Allow .fq extension
#12
GoogleCodeExporter
closed
9 years ago
6
ImportError: No module named lib.cutadapt
#11
GoogleCodeExporter
closed
9 years ago
2
trouble reading from STDIN
#10
GoogleCodeExporter
closed
9 years ago
5
"ValueError: Length of quality sequence and length of read do not match (81+0!=80)"
#9
GoogleCodeExporter
closed
9 years ago
3
"Histogram of adapter lengths" reports confusing numbers
#8
GoogleCodeExporter
closed
9 years ago
6
quality trimming assumes phred+33 encoding
#7
GoogleCodeExporter
closed
9 years ago
1
Support FASTA + QUAL (not just for colour space)
#6
GoogleCodeExporter
closed
9 years ago
6
funal.zhang@gmail.com
#5
GoogleCodeExporter
closed
9 years ago
1
optionally output reads in which no adapter sequence was found to a separate file
#4
GoogleCodeExporter
closed
9 years ago
1
output additional info about the cut adapters
#3
GoogleCodeExporter
closed
9 years ago
2
discard trimmed reads shorter than a specified length
#2
GoogleCodeExporter
closed
9 years ago
1
support for adapters known to be ligated to the 3' end
#1
GoogleCodeExporter
closed
9 years ago
1
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