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alihaydaroglu
/
suite3d
Fast, accurate, volumetric cell detection. Developed for Light Beads Microscopy, usable for other volumetric 2P. In development
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Need updates for bug fix on LBM shift
#73
landoskape
closed
4 months ago
0
Standard 2p pipeline - initial IO refactor
#72
landoskape
closed
2 months ago
1
Pulling from dev to stay up to date
#71
landoskape
closed
4 months ago
0
implement better crosstalk estimation
#70
alihaydaroglu
opened
4 months ago
0
make 2d and 3d registration work for the webui
#69
alihaydaroglu
opened
4 months ago
0
create a metric to decide between 2D or 3D registration
#68
alihaydaroglu
opened
4 months ago
0
implement cpu-based 3D registration
#67
alihaydaroglu
opened
4 months ago
0
non-strip shaped MROIs
#66
alihaydaroglu
opened
4 months ago
0
Problematic tiff files
#65
alihaydaroglu
opened
4 months ago
0
CUDA compatibility issue
#64
alihaydaroglu
opened
4 months ago
0
split LBM quirky functions from main code
#63
alihaydaroglu
opened
4 months ago
0
allow arbitrary I/O functions to be used
#62
alihaydaroglu
opened
4 months ago
5
hot fix to load to webui incomplete jobs
#61
alihaydaroglu
closed
5 months ago
0
Update README.md
#60
alihaydaroglu
closed
5 months ago
0
Merging 3D registration, web UI, etc. to main
#59
alihaydaroglu
closed
5 months ago
0
make the plane-plane alignment optional
#58
landoskape
closed
5 months ago
1
Support for non lbm data loading
#57
landoskape
closed
5 months ago
0
Anatomical only ROI detection in 3D
#56
davidhildebrand
closed
9 months ago
2
Crash in sweep_params for correlation map
#55
oterocoronel
closed
11 months ago
2
max_rigid_shift should be int
#54
oterocoronel
opened
11 months ago
0
Adding normalizing step for intensity values
#53
oterocoronel
closed
4 months ago
1
Use mean image instead of correlation map for seeding ROIs
#52
oterocoronel
opened
1 year ago
0
Kernel crashes after restarting crashed jupter notebook
#51
InstructorAlan
closed
11 months ago
1
implement better npil subtraction
#50
alihaydaroglu
opened
1 year ago
0
Remaining suite2p dependencies
#49
oterocoronel
closed
1 year ago
1
0.3
#48
alihaydaroglu
closed
1 year ago
0
merging new changes in dev to Sam's branch
#47
alihaydaroglu
opened
1 year ago
0
GPU registration seems off
#46
oterocoronel
closed
1 year ago
6
Initialization got much slower
#45
oterocoronel
closed
4 months ago
1
non-GPU registration crashes
#44
oterocoronel
closed
1 year ago
3
Crash when running job.vis_vmap_sweep(sweep_summary)
#43
oterocoronel
closed
4 months ago
2
Features for better lateral offset estimation
#42
oterocoronel
closed
4 months ago
3
Support for non lbm data loading
#41
landoskape
closed
5 months ago
10
implement non-LBM data support
#40
alihaydaroglu
opened
1 year ago
2
RAM management in GPU registration
#39
oterocoronel
opened
1 year ago
8
Added back os.chdir() to demo notebook
#38
landoskape
closed
1 year ago
0
GPU registration, refactoring, new demos etc.
#37
alihaydaroglu
closed
1 year ago
0
speed up dask reconstruction
#36
alihaydaroglu
opened
1 year ago
0
remove s2p dependency completely
#35
alihaydaroglu
opened
1 year ago
0
accelerate initialization step on GPU
#34
alihaydaroglu
closed
4 months ago
1
properly parallelize correlation map computation
#33
alihaydaroglu
closed
4 months ago
0
properly parallelize neuropil mask computation
#32
alihaydaroglu
opened
1 year ago
2
duplicates at cell detection patch edges?
#31
alihaydaroglu
closed
1 year ago
1
Broadcast error Full_demo
#30
Sihao
closed
1 year ago
9
sweep_params crash
#29
oterocoronel
closed
1 year ago
2
Adding 'pyqtgraph' package
#28
oterocoronel
closed
1 year ago
1
mkl_fft not available on AMD or M1
#27
alihaydaroglu
opened
1 year ago
1
sweep_parameters uses large amounts of RAM for large FOV recordings
#26
oterocoronel
closed
1 year ago
5
add sweep for detection parameters
#25
alihaydaroglu
closed
4 months ago
0
Full_Demo KeyError
#24
Sihao
closed
1 year ago
2
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