alipirani88 Comparative_Genomics issues

alipirani88 / Comparative_Genomics

Micro 612 genomics workshop

http://comparative-genomics.readthedocs.io/en/latest/index.html#

36 stars 32 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Variant Calling Dataset

#64 vappiah opened 5 months ago
0
Update README.md

#63 esnitkin914 closed 3 years ago
0
Update README.md

#62 esnitkin914 closed 3 years ago
0
Update README.md

#61 esnitkin914 closed 3 years ago
0
Update README.md

#60 esnitkin914 closed 3 years ago
0
Update README.md

#59 esnitkin914 closed 3 years ago
0
Day2pm - Pre-run Ariba MLST

#58 alipirani88 opened 3 years ago
1
Day2pm - Ariba in day2pm conda environement is not working.

#57 alipirani88 opened 3 years ago
0
Day1pm: Include snpEff, bgzip and tabix commands into the VRE_dapto_resistance and Acinetobacter_colistin_resistance variant_call.sh scripts.

#56 alipirani88 closed 3 years ago
2
shared data directory format

#55 zenalapp opened 4 years ago
0
Update README.md

#54 esnitkin914 opened 5 years ago
0
Day 3 Afternoon

#53 alipirani88 opened 5 years ago
1
Day 3 Morning

#52 alipirani88 opened 5 years ago
0
Day 2 Afternoon

#51 alipirani88 opened 5 years ago
1
Day 2 Morning

#50 alipirani88 opened 5 years ago
0
Day 1 Afternoon

#49 alipirani88 opened 5 years ago
0
Day 1 Morning

#48 alipirani88 opened 5 years ago
2
Merge pull request #1 from alipirani88/master

#47 alipirani88 closed 5 years ago
0
Update day1_afternoon.md

#46 esnitkin914 closed 6 years ago
0
fixed typos

#45 zenalapp closed 6 years ago
0
fixed typos

#44 zenalapp closed 6 years ago
0
fixed typos

#43 zenalapp closed 6 years ago
0
day 1 afternoon - file extension issue

#42 sthiede closed 6 years ago
3
Update README.md

#41 esnitkin914 closed 6 years ago
0
broken link

#40 zenalapp closed 6 years ago
1
read depth

#39 zenalapp closed 6 years ago
1
Fixed typos and made clarifications

#38 zenalapp closed 6 years ago
0
Update README.md

#37 zenalapp closed 6 years ago
2
How Picard works

#36 zenalapp closed 6 years ago
1
index bam file command missing

#35 zenalapp closed 6 years ago
2
Update README.md

#34 esnitkin914 closed 6 years ago
1
bwa/bowtie2 clarification

#33 zenalapp closed 6 years ago
1
rearranged lines

#32 sthiede closed 6 years ago
0
wd is the shortcut not micro612

#31 sthiede closed 6 years ago
0
there was no homework assignment

#30 sthiede closed 6 years ago
0
Update README.md

#29 sthiede closed 6 years ago
0
Update README.md

#28 sthiede closed 6 years ago
0
Update README.md

#27 sthiede closed 6 years ago
0
switch legacy Blast to the latest blast+

#26 alipirani88 closed 6 years ago
1
Update README.md

#25 zenalapp closed 6 years ago
0
Add roary Pan genome analysis and in place of Perform pan-genome analysis with LS-BSR

#24 alipirani88 closed 6 years ago
1
Add ARIBA AMR gene detection steps and remove Identification of antibiotic resistance genes with LS-BSR and the ARDB database

#23 alipirani88 closed 6 years ago
0
MInor grammatical edits

#22 esnitkin914 closed 7 years ago
0
Updated path to usearch

#21 esnitkin914 closed 7 years ago
0
Updated path for LS-BSR

#20 esnitkin914 closed 7 years ago
0
Add -o flag to samtools sort command

#19 esnitkin914 closed 6 years ago
1
Minor gramatical changes

#18 esnitkin914 closed 7 years ago
0
Minor gramatical fixes

#17 esnitkin914 closed 7 years ago
0
Minor gramatical edits in advance of 2017 class

#16 esnitkin914 closed 7 years ago
0
typos

#15 swhitefi closed 6 years ago
0