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alipirani88
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Comparative_Genomics
Micro 612 genomics workshop
http://comparative-genomics.readthedocs.io/en/latest/index.html#
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Variant Calling Dataset
#64
vappiah
opened
7 months ago
0
Update README.md
#63
esnitkin914
closed
3 years ago
0
Update README.md
#62
esnitkin914
closed
3 years ago
0
Update README.md
#61
esnitkin914
closed
3 years ago
0
Update README.md
#60
esnitkin914
closed
3 years ago
0
Update README.md
#59
esnitkin914
closed
3 years ago
0
Day2pm - Pre-run Ariba MLST
#58
alipirani88
opened
3 years ago
1
Day2pm - Ariba in day2pm conda environement is not working.
#57
alipirani88
opened
3 years ago
0
Day1pm: Include snpEff, bgzip and tabix commands into the VRE_dapto_resistance and Acinetobacter_colistin_resistance variant_call.sh scripts.
#56
alipirani88
closed
3 years ago
2
shared data directory format
#55
zenalapp
opened
4 years ago
0
Update README.md
#54
esnitkin914
opened
5 years ago
0
Day 3 Afternoon
#53
alipirani88
opened
5 years ago
1
Day 3 Morning
#52
alipirani88
opened
5 years ago
0
Day 2 Afternoon
#51
alipirani88
opened
5 years ago
1
Day 2 Morning
#50
alipirani88
opened
5 years ago
0
Day 1 Afternoon
#49
alipirani88
opened
5 years ago
0
Day 1 Morning
#48
alipirani88
opened
5 years ago
2
Merge pull request #1 from alipirani88/master
#47
alipirani88
closed
6 years ago
0
Update day1_afternoon.md
#46
esnitkin914
closed
6 years ago
0
fixed typos
#45
zenalapp
closed
6 years ago
0
fixed typos
#44
zenalapp
closed
6 years ago
0
fixed typos
#43
zenalapp
closed
6 years ago
0
day 1 afternoon - file extension issue
#42
sthiede
closed
6 years ago
3
Update README.md
#41
esnitkin914
closed
6 years ago
0
broken link
#40
zenalapp
closed
6 years ago
1
read depth
#39
zenalapp
closed
6 years ago
1
Fixed typos and made clarifications
#38
zenalapp
closed
6 years ago
0
Update README.md
#37
zenalapp
closed
6 years ago
2
How Picard works
#36
zenalapp
closed
6 years ago
1
index bam file command missing
#35
zenalapp
closed
6 years ago
2
Update README.md
#34
esnitkin914
closed
6 years ago
1
bwa/bowtie2 clarification
#33
zenalapp
closed
6 years ago
1
rearranged lines
#32
sthiede
closed
6 years ago
0
wd is the shortcut not micro612
#31
sthiede
closed
6 years ago
0
there was no homework assignment
#30
sthiede
closed
6 years ago
0
Update README.md
#29
sthiede
closed
6 years ago
0
Update README.md
#28
sthiede
closed
6 years ago
0
Update README.md
#27
sthiede
closed
6 years ago
0
switch legacy Blast to the latest blast+
#26
alipirani88
closed
6 years ago
1
Update README.md
#25
zenalapp
closed
6 years ago
0
Add roary Pan genome analysis and in place of Perform pan-genome analysis with LS-BSR
#24
alipirani88
closed
6 years ago
1
Add ARIBA AMR gene detection steps and remove Identification of antibiotic resistance genes with LS-BSR and the ARDB database
#23
alipirani88
closed
6 years ago
0
MInor grammatical edits
#22
esnitkin914
closed
7 years ago
0
Updated path to usearch
#21
esnitkin914
closed
7 years ago
0
Updated path for LS-BSR
#20
esnitkin914
closed
7 years ago
0
Add -o flag to samtools sort command
#19
esnitkin914
closed
6 years ago
1
Minor gramatical changes
#18
esnitkin914
closed
7 years ago
0
Minor gramatical fixes
#17
esnitkin914
closed
7 years ago
0
Minor gramatical edits in advance of 2017 class
#16
esnitkin914
closed
7 years ago
0
typos
#15
swhitefi
closed
6 years ago
0
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