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amc-heme
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SCUBA
Plotting functions for SingleCellExperiment objects
MIT License
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load and load_mudata functions
#107
jairav
opened
1 week ago
0
Sar add h5mu
#106
wish1832
closed
1 week ago
0
Methods SG- all_keys and get_all_cells
#105
srg0502
closed
1 week ago
0
Add a SCUBA function for downsampling cells
#104
wish1832
opened
1 month ago
0
Add error messages to fetch_reduction
#103
wish1832
closed
1 month ago
0
Correct BiocManager::install in README.md
#102
wish1832
closed
2 months ago
0
Package install issues with R 4.4.1 due to outdated dependencies?
#101
aburtis
closed
1 month ago
4
Methods to determine if a feature can be retrieved by SCUBA methods
#100
wish1832
opened
3 months ago
0
Improve installation instructions
#99
wish1832
closed
2 months ago
0
Move anndata to "suggests" field
#98
wish1832
closed
2 months ago
0
Bioconductor dependencies do not install properly when installing SCUBA
#97
wish1832
closed
2 months ago
0
Add tests for complete coverage on all non-plot functions
#96
jairav
opened
3 months ago
0
Fix error with Fetch_data for anndata objects with obsm matrices with multiple underscores
#95
wish1832
closed
3 months ago
0
#34, #84 merge
#94
wish1832
closed
3 months ago
0
Merge fix for #84 to intermediate branch with #34 for testing
#93
wish1832
closed
3 months ago
0
Merge #34 to intermediate branch with #84 for testing
#92
wish1832
closed
3 months ago
0
Performance of fetch_reduction, fetch_metadata is slower than FetchData for anndata objects
#91
wish1832
opened
3 months ago
1
In scExploreR, anndata objects containing embeddings in obsm with more than one underscore in name produce an error
#90
agillen
closed
3 months ago
0
Add WhichCells Methods
#89
wish1832
opened
5 months ago
0
Layer functionality for anndata objects
#88
wish1832
closed
3 months ago
1
Rename "slot" parameter of FetchData to "layer"
#87
wish1832
closed
3 months ago
1
Added logic for selecting feature columns when label_by is NULL.
#86
jairav
closed
5 months ago
0
Add methods to SCUBA
#85
wish1832
closed
3 months ago
0
`slot` parameter does nothing for anndata objects
#84
wish1832
closed
3 months ago
0
fetch_reduction returns empty data.frame for SCE and anndata objects
#83
wish1832
closed
1 month ago
0
New Function: gene_exists
#82
wish1832
opened
8 months ago
0
Add guidance on HDF5 compression in vignettes
#81
wish1832
opened
8 months ago
0
Update DESCRIPTION
#80
wish1832
closed
10 months ago
0
Ci testing
#79
jairav
closed
10 months ago
0
Add Seurat license
#78
wish1832
closed
11 months ago
0
Ci testing
#77
jairav
closed
11 months ago
0
catching up branch with additional_testing branch
#76
jairav
closed
11 months ago
0
Additional tests
#75
jairav
closed
11 months ago
0
Errors for unsupported uses of fetch_cells
#74
wish1832
closed
12 months ago
0
Fix #71
#73
jairav
closed
12 months ago
0
Fix #71
#72
wish1832
closed
12 months ago
0
Inconsistent behavior on FetchData for SCE objects
#71
jairav
closed
12 months ago
0
SCUBA support for anndata objects
#70
wish1832
closed
1 year ago
0
Error when calling plot_violin with a custom palette
#69
wish1832
closed
3 months ago
1
split_by variable not properly processed via plot_violin
#68
wish1832
closed
1 year ago
0
Error in plot_violin when split_by is used
#67
wish1832
closed
1 year ago
0
Add fetch_matrix
#66
wish1832
closed
1 year ago
0
Violin Plots: disable points for datasets with many cells
#65
wish1832
closed
5 months ago
1
Update anndata_fetchdata branch with renamed package references
#64
wish1832
closed
1 year ago
0
Update anndata_fetchdata branch with name change to SCUBA
#63
wish1832
closed
1 year ago
0
Rename Package to SCUBA in DESCRIPTION
#62
wish1832
closed
1 year ago
0
Merge Updated Functions into Dev Branch
#61
wish1832
closed
1 year ago
0
Merge pull request #59 from amc-heme/main
#60
jairav
closed
1 year ago
0
Anndata methods used in plot_reduction, tests
#59
jairav
closed
1 year ago
0
Differential Expression Function
#58
wish1832
closed
5 months ago
1
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