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amc-heme
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scExploreR
Shiny app for single cell omics data visualization
https://amc-heme.github.io/scExploreR/
MIT License
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Reconcile pkgdown, R Markdown rendering
#250
wish1832
closed
5 months ago
0
Render Dataset Setup Vignette "as-is"
#249
wish1832
closed
5 months ago
0
Add bslib installation to pkgdown workflow
#248
wish1832
closed
5 months ago
0
Modfiy pkgdown workflow
#247
wish1832
closed
5 months ago
0
Pre-compute Dataset Setup Article
#246
wish1832
closed
5 months ago
0
Merge Dev Version Into Main
#245
wish1832
closed
5 months ago
0
Add methods for DGE
#244
wish1832
closed
5 months ago
0
Update run_scExploreR.R
#243
jairav
closed
5 months ago
0
Render call causing error on Posit Connect
#242
jairav
closed
5 months ago
0
Config app crashes when pressing "Load config file" when no config path is defined
#241
wish1832
closed
1 week ago
1
Add explicit documentation on scExploreR-specific data requirements for anndata objects
#240
wish1832
closed
1 month ago
1
Support Anndata Objects in scExploreR
#239
wish1832
closed
6 months ago
0
Fix Plots Tab Spinners
#238
wish1832
closed
6 months ago
0
Add zero-centered palette for relative activities (TF, pathway, etc.) on FeaturePlots.
#237
agillen
opened
6 months ago
0
Test spinner fix on most current dev version
#236
wish1832
closed
6 months ago
0
New subset interface: categorical metadata values are unsorted
#235
wish1832
closed
1 month ago
2
scExploreR v0.9.0
#234
wish1832
closed
7 months ago
0
Add Hexbin Plots
#233
wish1832
opened
7 months ago
1
Create LICENSE
#232
agillen
closed
7 months ago
0
Change SCEPlots References to SCUBA
#231
wish1832
closed
7 months ago
0
Plots tab spinner displays too often
#230
wish1832
opened
9 months ago
0
Add interactive downsampling to app
#229
wish1832
opened
9 months ago
0
Implement consistent DE testing and auROC calculation across objects.
#228
agillen
opened
10 months ago
2
Error with UI for ordering groups for ridge plots
#227
wish1832
closed
10 months ago
1
Error defining UI for reordering groups on plots, with SingleCellExperiment objects
#226
wish1832
closed
1 month ago
1
Re-implement subsetting for SingleCellExperiment objects
#225
wish1832
opened
11 months ago
6
dplyr functions in app crash with SingleCellExperiment objects
#224
wish1832
closed
1 month ago
1
Config app: handle loading of assays/metadata/reductions not in object
#223
wish1832
opened
11 months ago
0
Spinner in plots tab: window progress is re-set
#222
wish1832
closed
1 month ago
1
Adapt code to support multiple object classes
#221
wish1832
closed
1 month ago
0
Plots tab performance improvements, loading spinner
#220
wish1832
closed
1 year ago
0
Pull main updates to seurat5_dge
#219
agillen
closed
1 year ago
0
Remove assay key from feature plots with custom titles
#218
wish1832
closed
1 year ago
0
Legend options menu
#217
wish1832
closed
1 year ago
0
Nested observe statement in plot_module
#216
wish1832
closed
1 month ago
1
Update demo_version branch with bug fixes from main
#215
wish1832
closed
1 year ago
0
Correct 404 error with auto dictionary
#214
wish1832
closed
1 year ago
0
404 error when accessing automatically generated object dictionary
#213
wish1832
closed
1 year ago
1
Update documentation on demo version of browser
#212
wish1832
closed
1 year ago
0
Update Vignettes
#211
wish1832
closed
1 year ago
0
Fix issue in #197 with error not displaying
#210
wish1832
closed
1 year ago
0
Merge content in automated-testing branch
#209
wish1832
closed
1 year ago
0
Fix #205 (multiple features error in dot plot)
#208
wish1832
closed
1 year ago
0
Metadata pie charts for datasets with more than one patient level metadata variable
#207
wish1832
closed
1 month ago
1
Feature expression based DGE fails
#206
wish1832
closed
1 year ago
1
Error in dot plots when attempting to use separate features
#205
wish1832
closed
1 year ago
0
Assay keys appear on feature plot titles for the ADT threshold assay when "title options" is set to "custom"
#204
wish1832
opened
1 year ago
3
Write tests for shiny_* plottting functions
#203
wish1832
opened
1 year ago
0
Legend Size Options
#202
wish1832
closed
1 year ago
1
Add spinners to individual plots
#201
wish1832
closed
1 month ago
1
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