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amc-heme
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scExploreR
Shiny app for single cell omics data visualization
https://amc-heme.github.io/scExploreR/
MIT License
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Subsetting drops all cells with NA in any metadata column
#65
agillen
opened
2 years ago
7
Re-implement subsetting for SingleCellExperiment objects
#225
wish1832
opened
11 months ago
6
DGE based on an expression threshold does not run
#197
wish1832
closed
1 year ago
4
Use YAML more extensively?
#105
agillen
closed
1 month ago
4
Document or improve interface for filtering DGE table results
#273
wish1832
opened
1 month ago
3
Infinite loop in plots tab
#266
wish1832
opened
1 month ago
3
Gene correlation issue
#258
sheltoia
closed
1 month ago
3
Assay keys appear on feature plot titles for the ADT threshold assay when "title options" is set to "custom"
#204
wish1832
opened
1 year ago
3
Assay key appears when selecting custom titles on feature, ridge plots
#180
wish1832
closed
1 month ago
3
Correlations tab: assay used for feature choice is not necessarily the RNA assay
#125
wish1832
closed
1 year ago
3
Add ability to threshold (or at least visualize) ADT histograms
#83
agillen
opened
1 year ago
3
Change order of groups on plots
#82
wish1832
closed
1 month ago
3
Plotting metadata not included in the config file produces an error
#54
agillen
closed
2 years ago
3
Violin Plots: Legend Does not Respond to Subset
#47
wish1832
closed
2 years ago
3
provide data dictionary for variable definitions
#27
kengel001
closed
1 month ago
3
add ability to manually define color schemes
#8
kengel001
closed
1 month ago
3
Add human readable suffix to DotPlots
#299
agillen
opened
4 days ago
2
Error when making blended feature plot
#280
wish1832
closed
1 week ago
2
Disable accept subset button while filters are being edited
#265
wish1832
closed
1 month ago
2
Issue with updating DEG list in scExploreR-AML
#257
anavujovic1
closed
2 months ago
2
New subset interface: categorical metadata values are unsorted
#235
wish1832
closed
1 month ago
2
Implement consistent DE testing and auROC calculation across objects.
#228
agillen
opened
10 months ago
2
Scatterplot in plots tab has an error when used with non-default palettes
#199
wish1832
closed
1 year ago
2
Config file loading feature only updates metadata options once upon loading
#192
wish1832
closed
1 year ago
2
Plot SVG downloads do not work
#186
wish1832
closed
1 year ago
2
Assay keys not being removed from features when plotting
#175
wish1832
closed
1 year ago
2
Notifications when loading config file
#149
wish1832
opened
1 year ago
2
Config app safeguards
#146
wish1832
closed
1 month ago
2
App crashes when switching between two objects, if a feature not in the second object is selected
#115
wish1832
opened
1 year ago
2
Use fileInput in config app
#110
wish1832
closed
1 year ago
2
YAML file for datasets
#103
wish1832
closed
1 year ago
2
Annotate ADTs as representing log-scale expression values
#96
wish1832
opened
1 year ago
2
Integrate ADT thresholds with feature plots
#92
wish1832
closed
1 year ago
2
Add ability to save state in app
#76
wish1832
opened
2 years ago
2
Control which numeric metadata variables to add to the app, set display names and descriptions
#73
wish1832
opened
2 years ago
2
Plots return "invalid quartz() device size" when initially rendered
#72
wish1832
closed
1 month ago
2
Original axes limits checkbox does not work for feature plot
#63
wish1832
closed
2 years ago
2
Gene selection text box in correlations tab does not populate
#58
wish1832
closed
2 years ago
2
Clicking "Reset Filters" Causes the App to Crash
#57
wish1832
closed
2 years ago
2
Increased flexibility for violin and dot plots
#41
agillen
opened
2 years ago
2
Lookup table for ADT entry, where ADT name does not match it's corresponding gene name
#34
wish1832
opened
2 years ago
2
Feature Plots Split by a Variable Have Different Expression Scales
#30
wish1832
opened
2 years ago
2
Ability to Toggle Legend in Plots Tab
#29
wish1832
closed
2 years ago
2
Mouse-over Help
#12
wish1832
opened
2 years ago
2
Saved plots are not responsive to changes in size
#1
agillen
closed
2 years ago
2
Sort plots by feature expression
#288
wish1832
closed
4 days ago
1
Documentation for Object Guidelines
#277
wish1832
opened
1 month ago
1
Review documentation prior to release
#276
wish1832
opened
1 month ago
1
Document feature differences between object formats
#274
wish1832
opened
1 month ago
1
Sort metadata values alphanumerically in subset interface preview
#267
wish1832
closed
1 month ago
1
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