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amkozlov
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raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
GNU Affero General Public License v3.0
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Multi raxml
#42
amkozlov
closed
6 years ago
0
Is the function of morphological weight calibration available?
#41
thkuo
closed
6 years ago
1
Implement transfer bootstrap expectation (TBE)
#40
amkozlov
closed
5 years ago
1
Stop of RAxML-NG with unknown error
#39
ATVincent
closed
6 years ago
3
Uninformative error if partition file ends with a blank line
#38
TheWhyofFry
closed
6 years ago
3
Topological convergence criterion (-D option)
#37
amkozlov
opened
6 years ago
0
Citing raxml-ng
#36
maesaar
closed
6 years ago
1
Add "check" command to check/reduce the alignment
#35
amkozlov
closed
6 years ago
1
check if best ML tree lies on a phylogentic terrace
#34
amkozlov
closed
6 years ago
1
error: wrong likelihood derivatives
#33
vmaffei
closed
6 years ago
2
Assertion `cur_loglh - new_loglh < -new_loglh * 1e-14' failed.
#32
smsaladi
closed
6 years ago
11
Discuss discrete tree operations.
#31
stamatak
opened
7 years ago
2
Implement some memory saving options?
#30
stamatak
opened
7 years ago
0
Add an outgroup option?
#29
stamatak
closed
6 years ago
2
Option to generate BS replicate MSAs
#28
stamatak
closed
5 years ago
2
Implement CAT approximation of rate heterogeneity?
#27
stamatak
opened
7 years ago
2
print out per-site log likelihoods
#26
stamatak
closed
4 years ago
2
python scripts
#25
stamatak
closed
5 years ago
1
Fast support measures
#24
stamatak
opened
7 years ago
1
Handle near-zero branch lengths?
#23
stamatak
closed
3 years ago
6
Implement POMO model?
#22
stamatak
opened
7 years ago
0
Implement some advanced mixture models
#21
stamatak
opened
7 years ago
0
Implement RNA secondary structure models?
#20
stamatak
opened
7 years ago
2
Implement binary/multi-state morphological models?
#19
stamatak
closed
6 years ago
2
Implement Quartet Sampling
#18
amkozlov
opened
7 years ago
0
compilation fails
#17
alex-seitz
closed
7 years ago
4
Support AVX512F
#16
GabeAl
opened
7 years ago
6
Ascertainment Bias Correction
#15
esteinig
closed
7 years ago
3
Implement constrained tree search
#14
amkozlov
closed
6 years ago
2
support unlinked branch lengths for partitioned alignments
#13
amkozlov
closed
6 years ago
2
Add support for ascertainment bias correction
#12
amkozlov
closed
7 years ago
1
Improve PHYLIP parser performance
#11
amkozlov
closed
7 years ago
1
VCF format support
#10
amkozlov
opened
7 years ago
0
MSA checks (duplicate names/seqs, all-gap columns etc)
#9
amkozlov
closed
7 years ago
0
alternative parallelization (multiple concurrent tree searches/bootstraps, like in RAxML-MPI)
#8
amkozlov
closed
4 years ago
8
bootstrapping convergence check (autoMRE etc.)
#7
amkozlov
closed
6 years ago
5
binary MSA format (ExaML-like)
#6
amkozlov
closed
4 years ago
2
multiple starting trees (random+pasimony+user in any combinations)
#5
amkozlov
closed
6 years ago
3
probabilistic MSA support (+ CATG parsing)
#4
amkozlov
closed
7 years ago
0
MPI parallelization
#3
amkozlov
closed
7 years ago
1
checkpointing
#2
amkozlov
closed
7 years ago
1
bootstrapping
#1
amkozlov
closed
7 years ago
0
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