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arborworkflows
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aRbor
aRbor, an R package with useful functions for Arbor workflows
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make.treedata should delete empty columns
#53
lukejharmon
opened
9 years ago
0
EasyMode - Ancestral State Reconstruction Tip Labels Need Color
#52
bobthacker
closed
9 years ago
1
Input Table Preview does not refresh
#51
bobthacker
closed
9 years ago
1
No Arbor Logo in EasyMode-AncestralStateReconstruction
#50
bobthacker
closed
9 years ago
1
check for singleton nodes et al.
#49
bobthacker
closed
9 years ago
3
integration with iPlant
#48
bobthacker
opened
9 years ago
1
ExpertMode: Docs Pages
#47
bobthacker
opened
9 years ago
0
Tree Metrics
#46
bobthacker
opened
9 years ago
0
H2 efficiently locate expert mode analyses
#45
bobthacker
opened
9 years ago
0
selective output for easy mode ancestral state continuous traits
#44
bobthacker
opened
9 years ago
0
Provide an explanation box in EasyMode
#43
bobthacker
opened
9 years ago
0
How to evaluate best fit model in Easy Mode (BM, OU, etc)?
#42
bobthacker
opened
9 years ago
0
auto-check for singleton nodes
#41
bobthacker
opened
9 years ago
0
sniff input files
#40
bobthacker
opened
9 years ago
0
read nexus files
#39
bobthacker
opened
9 years ago
0
legend is missing for ancestral state plot for discrete traits
#38
bobthacker
closed
9 years ago
1
auto-check for binary tree
#37
bobthacker
opened
9 years ago
6
easy mode does not read header line
#36
bobthacker
opened
9 years ago
1
Install depends on dplyr 0.3, cannot install_github with dplyr 0.2 loaded
#35
lukejharmon
closed
9 years ago
0
Add select_ to support later dplyr
#34
jeffbaumes
opened
9 years ago
3
model adequacy plots for fitDiscrete and fitContinuous
#33
lukejharmon
opened
9 years ago
0
GeoSSE
#32
lukejharmon
opened
9 years ago
0
functions not working in Arbor
#31
chodon
closed
9 years ago
1
make.tree type requirement in arbor
#30
chodon
opened
9 years ago
0
pull species list from sequence blast
#29
lukejharmon
opened
9 years ago
0
enhance phylopcaArbor functionality
#28
lukejharmon
opened
9 years ago
0
make.treedata and column names
#27
lukejharmon
closed
9 years ago
1
enhance bisseArbor functionality
#26
lukejharmon
opened
9 years ago
0
create general na functions for treedata
#25
lukejharmon
opened
9 years ago
7
physig should take in treedata objects
#24
lukejharmon
closed
9 years ago
1
continuousCorrelation fails when there are NAs
#23
lukejharmon
closed
9 years ago
1
"SYM" unlikely to work for aceArbor
#22
lukejharmon
opened
9 years ago
0
physigArbor error
#21
bobthacker
closed
9 years ago
13
Add colorbrewer as dependency for pal()
#20
jeffbaumes
closed
10 years ago
1
Major change to functionality of randomlyAddTaxa
#19
eliotmiller
closed
10 years ago
1
Patch 2
#18
eliotmiller
closed
10 years ago
0
consistency with s3 generics
#17
lukejharmon
closed
9 years ago
0
summarize.treedata() crashes R
#16
lukejharmon
closed
10 years ago
1
select() inside a function doesn't work as expected
#15
lukejharmon
closed
9 years ago
1
Character type detection
#14
lukejharmon
closed
9 years ago
0
Standardize outputs for physigArbor
#13
lukejharmon
closed
9 years ago
1
discrete character correlations
#12
lukejharmon
closed
10 years ago
0
include some cospeciation stuff
#11
lukejharmon
opened
10 years ago
0
bisse
#10
lukejharmon
closed
9 years ago
1
birth-death models
#9
lukejharmon
opened
10 years ago
0
PGLS
#8
lukejharmon
closed
10 years ago
0
PIC correlation test
#7
lukejharmon
closed
10 years ago
0
Implement phylogenetic signal function that can handle discrete or continuous traits.
#6
lukejharmon
closed
10 years ago
0
Create randomlyAddTaxa
#5
eliotmiller
closed
10 years ago
0
aceArbor crashes when a character state is 0
#4
lukejharmon
closed
10 years ago
0
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