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arpcard
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rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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ValueError: "*" value in mate pair linkage of allele-level mapping (RGI bwt)
#190
jenayl
closed
10 months ago
1
Bump lxml from 4.6.5 to 4.9.1
#189
dependabot[bot]
closed
2 years ago
0
ValueError: zero-size array to reduction operation fmin which has no identity
#188
neelam19051
closed
1 year ago
3
Bio.alphabet issue[BUG]
#187
yasiromics
closed
2 years ago
1
additional .fai file produced
#186
Biofarmer
closed
2 years ago
5
Nudging heuristic leads to implausible results
#185
SvetlanaUP
closed
1 year ago
4
invalid protein fasta due to: '*'
#184
TKsh6
closed
2 years ago
2
Exception : <class 'KeyError'> -> '3' -> Model(1366) missing in database. Please generate new database.
#183
neelam19051
closed
2 years ago
3
How to merge multiple samples output of rgi bwt ??
#182
hafizmtalha
closed
2 years ago
1
What to look at Best_Hit_Bitscore or Best_Identities?
#181
elianapc
closed
1 year ago
1
Repetitive matches and abnormal id percentage
#180
pg42866
closed
10 months ago
2
[BUG]Problem with xml file
#179
Rainjie-afk
closed
1 year ago
2
Conda envs, solving environment not finished
#178
dbu008
closed
2 years ago
7
Current bioconda recipe biopython version causing incompatibilities
#177
fmaguire
closed
2 years ago
4
Bump lxml from 4.6.3 to 4.6.5
#176
dependabot[bot]
closed
2 years ago
0
RGI bwt: paired end VS single end. Which one is better?
#175
valei
closed
9 months ago
6
[BUG] lxml doesn't install from bioconda rgi-5.2.0
#174
biobrad
closed
1 year ago
3
Accession error while running the test scripts provided
#173
freddyfrancis
closed
2 years ago
1
[BUG] Bowtie2 exited when using --include_wildcard
#172
lexinwei
closed
2 years ago
1
Error while running RGI for loose hit, without nudging
#171
absartalat
closed
1 year ago
1
[Question]How to visualized .jsons which >20 M except the heatmap tool?
#170
EugeneAeolus
closed
1 year ago
3
Can not use RGI command by .py script
#169
EugeneAeolus
closed
2 years ago
1
Table values
#168
TommyH-Tran
closed
2 years ago
1
min() arg is an empty sequence
#167
jhalleran2
closed
2 years ago
2
Can't create conda environment and run rgi main
#166
TommyH-Tran
closed
2 years ago
2
[BUG] Repetitive Database Indexing on rgi bwt
#165
dcdanko-biotia
closed
1 year ago
2
Can not use RGI command as non root user ?
#164
clf-bio
closed
3 years ago
2
Help with singularity/docker install
#163
ewissel
closed
10 months ago
3
Add github-compatible CITATION.cff
#162
fmaguire
closed
3 years ago
0
Make hardcoded paths configurable via environment variables
#161
innovate-invent
closed
3 years ago
0
rgi main: error: unrecognized arguments
#160
stephenqub
closed
3 years ago
1
Trouble with kmer_query command: empty .json.fasta files
#159
ZoeHansen
closed
10 months ago
4
Start position for ORF
#158
XC-Zhai
closed
2 years ago
1
Check help after installation results in error message [BUG]
#157
merytouceda
closed
2 years ago
2
variants data, blast/diamond build incompatibility
#156
acvill
closed
2 years ago
1
Incomplete database install in docker container
#155
tpillone
closed
3 years ago
2
[BUG] The generated heatmap is not compatible with my json file results
#154
JALEM1
closed
1 year ago
3
RGI 5.2.0 recipe on conda still relies on old BioPython and has Python < 3.7 restriction
#153
asl
closed
1 year ago
4
docker run -v $PWD:/data finlaymaguire/rgi -h fails on conda run
#152
Jehops
closed
3 years ago
3
Is there a way to generate a tsv file with identity and coverage of AMR genes obtained
#151
ddh8602
closed
3 years ago
1
How to determine relative abundances for RGI bwt for metagenomics?
#150
mhmism
closed
1 year ago
3
Bump lxml from 4.6.2 to 4.6.3
#149
dependabot[bot]
closed
3 years ago
0
How to filter out resistance genes in metagenomics?
#148
mhmism
closed
1 year ago
1
Different results between BLAST and DIAMOND
#147
ATVincent
closed
3 years ago
4
Error loading database
#146
Somebodyatthdoor
closed
3 years ago
2
problem with gzipped files
#145
klincke
closed
2 years ago
6
docker image: rgi can't detect input file
#144
ewissel
closed
3 years ago
1
[BUG] unable to load any databases, local or system
#143
ewissel
closed
3 years ago
3
rgi main: no output or error message, program stops immediately
#142
womandrea
closed
2 years ago
3
rgi heatmap issue
#141
justabit96
closed
1 year ago
3
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