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arpcard
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rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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Resistance genes not identified by RGI
#238
btroppo
closed
11 months ago
2
How to interpret duplicate output rows and negative percent identity (rRNA gene variant model)
#237
danrlu
closed
10 months ago
1
RGI Heatmap category
#236
kayobianco
closed
11 months ago
1
RGI auto_load not working properly system wide
#235
raphenya
closed
10 months ago
2
RGI Support for CARD Short Names
#234
agmcarthur
closed
9 months ago
1
Can/should WildCARD be used for protein FASTA sequence searches?
#233
csmiller
closed
10 months ago
1
[BUG] Warnings and errors during installation using mamba
#232
Swt623
closed
8 months ago
3
[BUG] biopython bug?
#231
camilagazolla
closed
8 months ago
2
'validate_json: False' when loading the files
#230
DrBinZhu
closed
10 months ago
6
Controlling number of tmp files generated in hpc environment
#229
Amjadhpc
closed
10 months ago
5
Update CITATION.cff
#228
agmcarthur
closed
9 months ago
1
Bump requests from 2.24.0 to 2.31.0
#227
dependabot[bot]
closed
1 year ago
0
[BUG] rgi bwt does not use threads, seems to hang
#226
hazmup
closed
7 months ago
3
[BUG] rgi is uninstallable with mamba / snakemake
#225
hazmup
closed
1 year ago
0
Heatmap values generated from rgi-main json files
#224
StephanieAFlowers
closed
6 months ago
1
What is "ORF predicted nucleotide sequence"?
#223
augustkx
closed
9 months ago
2
Expose gene position coordinates
#222
rzlim08
closed
1 year ago
2
the test script is failing
#221
kbipinkumar
closed
9 months ago
1
[BUG] Salmonella sequence with best hit to Ecoli soxR instead of Salmonella soxR
#220
kalilamali
closed
9 months ago
1
[W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
#219
hazmup
closed
9 months ago
4
can not conda install
#218
Wanli-HE
closed
1 year ago
8
Accession file not found. BLAST databases require preprocessing using this command line
#217
weiguanyue
closed
9 months ago
1
Conda installation
#216
manolis2023
closed
9 months ago
11
[BUG] Error locating paths / singularity
#215
camilagazolla
closed
9 months ago
1
UserWarning: sequence should be at least 100000 characters (47098 found)
#214
raphenya
closed
9 months ago
1
What format should I use for antibiotic resistance analysis?
#213
osidito91
closed
1 year ago
1
Dev
#212
fmaguire
closed
1 year ago
0
Heatmap command error RGI 7.0.0
#211
namnh7
closed
1 year ago
1
Fix all but RGI BWT CI tests
#210
fmaguire
closed
1 year ago
0
GH Action Tweaks
#209
fmaguire
closed
1 year ago
0
Simplify conda env
#208
fmaguire
closed
1 year ago
0
Simplify
#207
fmaguire
closed
1 year ago
0
General code tidying
#206
fmaguire
closed
1 year ago
0
add test for PYRODIGAL
#205
raphenya
closed
1 year ago
0
add tet test
#204
raphenya
closed
1 year ago
0
rgi v6.0.1 unable to install using conda
#203
jayramr
closed
1 year ago
8
fastq read limit for rgi bwt?
#202
annettemcgrath
closed
9 months ago
2
Inconsistency summary table and results in CARD-RGI
#201
ikher
closed
1 year ago
3
Use Pyrodigal instead of Prodigal for ORF prediction
#200
althonos
closed
1 year ago
7
Heatmap question
#199
peflanag
closed
1 year ago
1
Fix infinite loop if fasta is empty
#198
rzlim08
closed
1 year ago
1
ValueError: Image size of 124950x11600 pixels is too large. It must be less than 2^16 in each direction.
#197
neelam19051
closed
1 year ago
1
OSError: [Errno 16] Resource busy
#196
peflanag
closed
1 year ago
2
--local (or default) assumes no parallel jobs
#195
nick-youngblut
closed
9 months ago
2
Add gene hit coordinates
#194
rzlim08
closed
1 year ago
2
failed to copy json file when loading CARD Reference Data
#193
BangzhuoTong
closed
9 months ago
2
[BUG]
#192
TommyH-Tran
closed
1 year ago
2
KeyError: 'Antibiotic+Adjuvant'
#191
neelam19051
closed
1 year ago
1
ValueError: "*" value in mate pair linkage of allele-level mapping (RGI bwt)
#190
jenayl
closed
9 months ago
1
Bump lxml from 4.6.5 to 4.9.1
#189
dependabot[bot]
closed
2 years ago
0
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