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arpcard
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rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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KMA in RGI bwt
#290
KatariinaParnanen
opened
3 weeks ago
1
[BUG] hit reported at 100% but is completely different
#289
bifidoman
opened
3 weeks ago
0
Discrepancies in Read Counts and Mapped Reads in CARD RGI BWT Output
#288
jihen-lau
opened
1 month ago
0
[Feature Request] support for input with annotated sequence
#287
Hocnonsense
closed
2 months ago
5
[W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
#286
jihen-lau
closed
2 months ago
1
Samtools pinned at 1.9
#285
VinzentRisch
closed
6 days ago
1
Error running rgi heatmap
#284
mradz19
closed
2 months ago
0
DIAMOND pinned at 0.8.36
#283
VinzentRisch
opened
3 months ago
2
[BUG] RGI bwt not working with the KMA aligner
#282
shya1201
closed
3 weeks ago
2
Kmer-query only works with data created with bwa or bowtie2 aligner
#281
VinzentRisch
opened
3 months ago
2
Bump requests from 2.31.0 to 2.32.0
#280
dependabot[bot]
closed
1 month ago
2
New metagenomics statistic
#279
agmcarthur
opened
3 months ago
2
[W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
#278
feihongloveworld
closed
2 months ago
1
The calculation method of gene frequency (or copy) in RGI_Heatmap
#277
ZYX593889540
closed
2 months ago
2
Normalize the abundance data
#276
mars188
opened
4 months ago
1
depreciate -split_prodigal_jobs
#275
agmcarthur
opened
4 months ago
4
[BUG]Error: Invalid parameter count for option '--query'
#274
diego00012138
closed
2 months ago
3
Error: 14 (Bad address)
#273
ellyyuyang
closed
5 months ago
6
purpose of --data in rgi main
#272
danpal96
closed
5 months ago
1
Use three underscores as an alternative separator when parsing Bam files
#271
lvreynoso
closed
2 months ago
1
Can't run rgi main with multiple input fasta files
#270
rvincenzi
closed
5 months ago
0
Error when running rgi main
#269
gabridinosauro
opened
5 months ago
3
Update `pyrodigal` to` v3.0`
#268
althonos
closed
5 months ago
0
[BUG] The readme file for RGI on Github is not rendering
#267
danrlu
closed
7 months ago
2
RGI heatmap does not execute
#266
DeepakNandi
closed
3 months ago
5
Failed tests and error message
#265
izip27
closed
7 months ago
1
Install instruction typo fixed
#264
mahimsafa
closed
7 months ago
2
RGI heatmap/parser Issue [BUG]
#263
MicoNick
closed
2 months ago
11
Does RGI apply to eukaryotic and viral genomes?
#262
qkqk-hub
closed
8 months ago
1
Collectors Not Found Error in test.sh in RGI Using pytest
#261
mainakbioinfo
closed
8 months ago
2
USING RGI TOOL V 3.6.2 IN Linux (Ubuntu)
#260
mainakbioinfo
closed
8 months ago
1
Inconsistent results of 'rgi main' and 'rgi bwt' on the same sequencing data
#259
JemmaSun
closed
5 months ago
9
[BUG]rgi database --version N/A
#258
alex-trist
closed
8 months ago
8
Is the command bamtools filter missing -length parameter?
#257
hunglin59638
closed
9 months ago
1
[BUG] [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
#256
JennKnapp
closed
5 months ago
19
Review/Update RGI for Galaxy
#255
agmcarthur
closed
4 months ago
6
resolve the hang problem #226
#254
hunglin59638
closed
10 months ago
1
resolve the hang problem #226
#253
hunglin59638
closed
10 months ago
0
failed to load latest card database(version 3.2.8) using docker rgi(latest)
#252
hemantgoyat22
closed
8 months ago
1
bugfix: df.append is deprecated, replace with pd.concat #248
#251
hunglin59638
closed
10 months ago
0
add dask and jellyfish to conda_env
#250
hunglin59638
closed
10 months ago
0
CARD version not available
#249
shreya1singh728
closed
10 months ago
2
Error running rgi heatmap
#248
ruwaniama
closed
10 months ago
1
kmer_query memory scaling
#247
Perugolate
closed
8 months ago
1
RGI wheel visualization
#246
Nitin123-4
closed
11 months ago
1
[Help want] name 'NCBIXML' is not defined
#245
ZhengJinfang1220
closed
11 months ago
4
Update README (and add Wiki)?
#244
agmcarthur
closed
10 months ago
3
change conda_env.yml to match requirements.txt
#243
zclaas
closed
12 months ago
1
Sample.fasta.temp.draft file not found
#242
jenniferlu717
closed
1 month ago
6
Add antibiotics to text output
#241
zclaas
closed
1 year ago
1
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