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aws-samples
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amazon-omics-tutorials
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Bump tensorflow-cpu from 2.11.1 to 2.12.1 in /example-workflows/protein-folding/containers/alphafold-predict/alphafold
#65
dependabot[bot]
opened
2 months ago
0
Bump tensorflow-cpu from 2.11.1 to 2.12.1 in /example-workflows/protein-folding/containers/alphafold-data/alphafold
#64
dependabot[bot]
opened
2 months ago
0
compute_pricing script doesn't support dynamic storage
#63
avigailmo
opened
2 months ago
0
create_parameter_json_from_nfcore_schema.py - issue
#62
hmkim
opened
3 months ago
0
new script to parse the nextflow_schema.json in nf-core pipelines to …
#61
nbulsara
closed
3 months ago
0
Pwyming dev
#60
wleepang
closed
3 months ago
0
Fixed hisat2/align/main.nf: perl script manipulation via sed replacement in HISAT2_ALIGN/main.nf to set /tmp to ./tmp
#59
a1ultima
closed
3 months ago
1
Fix HISAT2_ALIGN to handle index files with trailing characters, e.g. ".ht2l" (l for Large)
#58
a1ultima
closed
3 months ago
0
Monitoring CPU and memory usage
#57
hoyu310
closed
4 months ago
2
adding find_duplicate_read_sets
#56
djemec
closed
6 months ago
0
allow private ecr repositories as process container
#55
nbulsara
closed
6 months ago
0
Fix various typographical errors
#54
pxie2016
closed
6 months ago
0
Reference store sequences as reference
#53
dgoswamia
opened
8 months ago
1
fix typo
#52
wleepang
closed
8 months ago
0
Refactor ecr helper
#51
wleepang
closed
8 months ago
0
scrnaseq.nf failure with engine error 'NFCORE_SCRNASEQ:SCRNASEQ:MULTIQC'
#50
YinCai2796
opened
9 months ago
0
Error while using compute_pricing.py
#49
nbulsara
closed
9 months ago
3
Update README.md
#48
ariellasasson
closed
9 months ago
0
Update compute_pricing.py
#47
ajfriedman18
closed
9 months ago
1
Allow run name to be none when computing cost of a run
#46
smlchen
closed
9 months ago
1
container-puller: use cwl-utils to automatically extract the container names
#45
mr-c
opened
9 months ago
0
Include workflow definition
#44
jwarnn
opened
9 months ago
0
adding manifest generator to utility script
#43
ariellasasson
closed
10 months ago
0
remove nextflow pull command for non existent repo
#42
nbulsara
closed
11 months ago
0
Update base.config
#41
ajfriedman18
closed
9 months ago
1
fix numeric check to string check to recognize aws profile
#40
nbulsara
closed
11 months ago
0
lint fixes
#39
markjschreiber
closed
11 months ago
0
Bump @babel/traverse from 7.21.2 to 7.23.2 in /utils/cdk/omx-ecr-helper
#38
dependabot[bot]
closed
11 months ago
0
make inspect_nf compatible with new registry specification from nfcore
#37
nbulsara
closed
11 months ago
0
Update 200-omics_storage.ipynb
#36
wleepang
closed
11 months ago
0
adds nvcr.io to registries
#35
markjschreiber
closed
11 months ago
1
Add nvcr.io to supported registries
#34
markjschreiber
closed
11 months ago
1
add new workflows
#33
nbulsara
closed
1 year ago
3
fix cost reported when requested storage is lower than mininmum allowed capacity
#32
wleepang
closed
1 year ago
0
fix issue #30
#31
wleepang
closed
1 year ago
0
Manifest containing multiple versions of same image fails
#30
Tmacphee13
closed
1 year ago
1
fix duration calc: use .total_seconds() instead of .seconds
#29
wleepang
closed
1 year ago
0
compute run costs using new instanceType info from GetRunTask API
#28
wleepang
closed
1 year ago
0
Bump protobuf from 3.20.1 to 3.20.2 in /example-workflows/protein-folding/containers/alphafold-data/alphafold
#27
dependabot[bot]
closed
1 year ago
0
Bump numpy from 1.21.6 to 1.22.0 in /example-workflows/protein-folding/containers/alphafold-data/alphafold
#26
dependabot[bot]
closed
1 year ago
0
remove unused local container build functions
#25
wleepang
closed
1 year ago
0
Use GATK and GOTC container images that use Amazon Corretto 11
#24
wleepang
closed
1 year ago
0
Container for GATK without UseShenandoahGC
#23
YinCai2796
closed
1 year ago
1
Ktzouvanaws dev helpers
#22
ktzouvanaws
closed
1 year ago
0
Bump scipy from 1.7.0 to 1.10.0 in /example-workflows/protein-folding/containers/alphafold-data/alphafold
#21
dependabot[bot]
closed
1 year ago
0
Bump scipy from 1.7.0 to 1.10.0 in /example-workflows/protein-folding/containers/alphafold-predict/alphafold
#20
dependabot[bot]
closed
1 year ago
0
update analytics tutorial to run in all Omics supported regions
#19
wleepang
closed
1 year ago
0
Bump aws-cdk-lib from 2.66.0 to 2.80.0 in /utils/cdk/omx-ecr-helper
#18
dependabot[bot]
closed
1 year ago
0
manifest generated incorrectly for processes that have 'nfcore' registry
#17
nbulsara
closed
1 year ago
1
Make Storage tutorial work in all Omics regions
#16
wleepang
closed
1 year ago
0
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