beast-dev tracer issues

beast-dev / tracer

Posterior summarisation in Bayesian phylogenetics

https://beast.community/tracer

GNU Lesser General Public License v2.1

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issues

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Violin plots for comparing densities when multiple statistics or files are chosen.

#84 rambaut closed 7 years ago
0
Violin plots as a choice for continuous vs discrete Joint-Marginal

#83 rambaut closed 6 years ago
0
Box/Whisker plots don't have round value tick marks and ignore manual y-axis range.

#82 rambaut closed 7 years ago
1
the axis label of box plot is other way around

#81 walterxie closed 7 years ago
0
Fresh install on macOS 10.12 generates (work-around-able) error ...

#80 msuchard closed 7 years ago
3
add wiki pages

#79 walterxie closed 7 years ago
0
Integer red coloured bar should use HPD not Credible set

#78 walterxie closed 7 years ago
0
LinearAxis cannot handle very small decimal numbers

#77 walterxie opened 7 years ago
2
shade the circle in TangHuLu chart

#76 walterxie closed 7 years ago
1
legacy Java SE 6 runtime

#75 GuyBaele closed 7 years ago
7
make 'samples only' only available for scatter plot

#74 walterxie closed 7 years ago
2
Integer label is changed to double

#73 walterxie closed 7 years ago
0
TangHuLu chart should make area not radius proportional to probability

#72 walterxie closed 7 years ago
1
Very short log BEAST runs in Tracer

#71 GuyBaele closed 7 years ago
3
Exception of box plot

#70 walterxie closed 7 years ago
1
reload log file

#69 walterxie closed 7 years ago
1
Improve "Export Data"

#68 walterxie closed 7 years ago
1
Tracer does not reset if all logs are removed

#67 walterxie closed 7 years ago
1
incorrect JIntervalsChart if only one value

#66 walterxie closed 7 years ago
1
IntervalsPanel y-axis min/max tick should not equal to min/max data value

#65 walterxie closed 7 years ago
1
message does not show in DensityPanel

#64 walterxie closed 7 years ago
1
Summary Statistics table row names are incorrect when mixed numeric and categorical variables

#63 walterxie closed 7 years ago
1
Integer/Ordinal in Tracer 1.6 ?

#62 walterxie closed 7 years ago
1
add box plot

#61 walterxie closed 7 years ago
0
Joint-density plot of 1 ordinal and 1 categorical traces

#60 walterxie closed 7 years ago
0
add cross to mean in JIntervalsChart

#59 walterxie closed 7 years ago
1
FrequencyPlot is wrong if x not starting from 0 for ordinal type

#58 walterxie closed 7 years ago
1
LinearAxis not display big integer probably

#57 walterxie closed 7 years ago
1
Axes failed to make correct ticks when display categorical values of multiple traces

#56 walterxie closed 6 years ago
2
binsCombo should be disable when KDE is selected

#55 walterxie closed 7 years ago
1
Code refactoring for four panels

#54 walterxie closed 7 years ago
6
Make "Summary Statistics" column comparable between numeric and categorical

#53 walterxie closed 7 years ago
0
assignTraceTypeAccordingValue breaks loadTraces

#52 walterxie closed 7 years ago
1
remove isValid flag from analyseDistributionDiscrete()

#51 walterxie closed 7 years ago
1
Clarify between TraceCorrelation and TraceDistribution

#50 walterxie closed 7 years ago
0
Joint-density plot of 2 ordinal traces

#49 rambaut closed 7 years ago
6
Include 0 in x-axis density plots if within some proportion of the range of values.

#48 rambaut opened 7 years ago
1
For plots of ordinal traces, the axis ticks/labels should always be on unit intervals

#47 rambaut closed 6 years ago
0
Add the number of samples in the Statistics table

#46 rambaut closed 7 years ago
0
Categorical trace 'frequency of mode' should be divided by the number of states

#45 rambaut closed 7 years ago
1
Statistics for ordinal or categorical traces with only one state are not displayed

#44 rambaut closed 7 years ago
3
Inadequate sample size in log file causes burnin < stepsize

#43 walterxie closed 7 years ago
3
confusing argument in loadTraces(Reader r)

#42 walterxie closed 7 years ago
0
implement assignTraceTypeAccordingValue(int nTrace, String value)

#41 walterxie closed 7 years ago
1
Plot for ordinal data gives incorrect x-axis

#40 walterxie closed 7 years ago
1
Refactor some useful statistical functions for categorical values

#39 walterxie closed 7 years ago
0
Trace panel "Manual range" of "Axes ..." is broken

#38 walterxie closed 7 years ago
2
IndexOutOfBoundsException to load multiple logs

#37 walterxie closed 7 years ago
1
ListSelectionListener invoked twice

#36 walterxie closed 7 years ago
0
Traces with the same name in the same trace file

#35 rambaut closed 7 years ago
6

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