bids-apps MRtrix3_connectome issues

bids-apps / MRtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

http://www.mrtrix.org/

Apache License 2.0

50 stars 26 forks source link

issues

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Error in Participant-Level Processing with MRtrix3 Connectome Pipeline: Unable to Import Requisite Pre-Processed Data

#128 TSugiura0000 opened 5 months ago
8
Inter-modal registration: Use multi-contrast

#127 Lestropie opened 8 months ago
0
Upgrade to 0.6.0

#126 Lestropie opened 1 year ago
2
New commer. Can you help me to find the scratch folder. I need the recon all results. Thanks!

#125 ZhyGao opened 1 year ago
5
[MAINT] add GH CI workflow to test latest image

#124 Remi-Gau opened 1 year ago
0
Supporting input DWI data on different voxel grids

#123 Lestropie opened 1 year ago
3
Remove python2 dependency

#122 Lestropie opened 1 year ago
0
[BUG] Compromised credentials

#121 effigies closed 1 year ago
1
Build & CI fixes

#120 Lestropie opened 1 year ago
1
Unhandled Python exception

#119 granitz opened 1 year ago
1
Fix parsing IntendedFor when list

#118 Lestropie closed 1 year ago
0
preproc - Fieldmaps

#117 lizannea closed 2 years ago
7
Use FSL eddy --data_is_shelled when necessary

#116 Lestropie closed 1 year ago
0
Fix phase import

#115 Lestropie closed 2 years ago
0
Make use of Docker BuildKit

#114 Lestropie opened 2 years ago
0
Increment internal version to 0.5.2

#113 Lestropie closed 2 years ago
0
Containers: Update MRtrix3 version

#112 Lestropie closed 2 years ago
0
question: number of streamlines in tckgen

#111 LucSam opened 2 years ago
1
Fix to phase image scaling

#110 Lestropie closed 2 years ago
0
Fix search for fsl_anat executable

#109 Lestropie closed 2 years ago
0
Recipes: Updated paths for AAL atlases

#108 Lestropie closed 2 years ago
0
minor bug: tdi_T1.mif

#107 chrisvriend closed 2 years ago
1
dwidenoise: Concatenation strategy based on input

#106 Lestropie opened 3 years ago
0
Split-session processing

#105 Lestropie opened 3 years ago
0
Fix scratch image file name mismatches

#104 Lestropie closed 3 years ago
1
weights.csv, meanlength.csv and connectome.csv

#103 zhangxiaobai12345 opened 3 years ago
3
Upper limit on memory usage?

#102 bwinsto2 closed 3 years ago
10
Trying to incorporate synb0

#101 treanus opened 3 years ago
0
Preprocessed T1w data not found at participant level

#100 treanus closed 3 years ago
3
JSON exceptions

#99 Lestropie opened 3 years ago
2
What is the orientation of files in the anat output directory?

#98 civier opened 3 years ago
3
Give information on the output files in the documentation

#97 civier opened 3 years ago
1
Change complex data import

#96 Lestropie opened 3 years ago
0
Running the BIDS_validator on the subjects given in --participant_label only

#95 civier opened 3 years ago
1
Is there GPU/CUDA support for eddy?

#94 finalelement opened 3 years ago
9
FreeSurfer recon-all failure

#93 Lestropie opened 3 years ago
0
0.5.1 hotfix

#92 Lestropie closed 2 years ago
1
output-verbosity 3 and tractogram

#91 dkp closed 2 years ago
13
Trouble with participant level

#90 dkp closed 2 years ago
4
minor typo in documentation (participant1 instead of participant)

#89 dkp closed 4 years ago
2
How do I run with a session?

#88 dkp opened 4 years ago
1
Recipe updates

#87 Lestropie closed 4 years ago
0
Fs to dev cherrypick

#86 Lestropie closed 4 years ago
0
preproc: Use mtnormalise output for masking

#85 Lestropie closed 4 years ago
0
dockerhub update?

#84 dkp closed 4 years ago
3
participant: Modify ANTs MNI registration

#83 Lestropie closed 4 years ago
0
Run eddy_squad

#82 Lestropie closed 4 years ago
1
Pre-processing in the absence of reversed phase encoding data

#81 Lestropie opened 4 years ago
7
Split analysis level outputs

#80 Lestropie closed 4 years ago
0
Port to CircleCI 2.0

#79 Lestropie closed 4 years ago
0