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MRtrix3_connectome
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
http://www.mrtrix.org/
Apache License 2.0
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Error in Participant-Level Processing with MRtrix3 Connectome Pipeline: Unable to Import Requisite Pre-Processed Data
#128
TSugiura0000
opened
1 week ago
5
Inter-modal registration: Use multi-contrast
#127
Lestropie
opened
3 months ago
0
Upgrade to 0.6.0
#126
Lestropie
opened
10 months ago
2
New commer. Can you help me to find the scratch folder. I need the recon all results. Thanks!
#125
ZhyGao
opened
1 year ago
5
[MAINT] add GH CI workflow to test latest image
#124
Remi-Gau
opened
1 year ago
0
Supporting input DWI data on different voxel grids
#123
Lestropie
opened
1 year ago
3
Remove python2 dependency
#122
Lestropie
opened
1 year ago
0
[BUG] Compromised credentials
#121
effigies
closed
1 year ago
1
Build & CI fixes
#120
Lestropie
opened
1 year ago
1
Unhandled Python exception
#119
granitz
opened
1 year ago
1
Fix parsing IntendedFor when list
#118
Lestropie
closed
1 year ago
0
preproc - Fieldmaps
#117
lizannea
closed
1 year ago
7
Use FSL eddy --data_is_shelled when necessary
#116
Lestropie
closed
10 months ago
0
Fix phase import
#115
Lestropie
closed
1 year ago
0
Make use of Docker BuildKit
#114
Lestropie
opened
1 year ago
0
Increment internal version to 0.5.2
#113
Lestropie
closed
1 year ago
0
Containers: Update MRtrix3 version
#112
Lestropie
closed
1 year ago
0
question: number of streamlines in tckgen
#111
LucSam
opened
2 years ago
1
Fix to phase image scaling
#110
Lestropie
closed
1 year ago
0
Fix search for fsl_anat executable
#109
Lestropie
closed
1 year ago
0
Recipes: Updated paths for AAL atlases
#108
Lestropie
closed
2 years ago
0
minor bug: tdi_T1.mif
#107
chrisvriend
closed
2 years ago
1
dwidenoise: Concatenation strategy based on input
#106
Lestropie
opened
2 years ago
0
Split-session processing
#105
Lestropie
opened
2 years ago
0
Fix scratch image file name mismatches
#104
Lestropie
closed
2 years ago
1
weights.csv, meanlength.csv and connectome.csv
#103
zhangxiaobai12345
opened
2 years ago
3
Upper limit on memory usage?
#102
bwinsto2
closed
2 years ago
10
Trying to incorporate synb0
#101
treanus
opened
2 years ago
0
Preprocessed T1w data not found at participant level
#100
treanus
closed
2 years ago
3
JSON exceptions
#99
Lestropie
opened
2 years ago
2
What is the orientation of files in the anat output directory?
#98
civier
opened
2 years ago
3
Give information on the output files in the documentation
#97
civier
opened
2 years ago
1
Change complex data import
#96
Lestropie
opened
3 years ago
0
Running the BIDS_validator on the subjects given in --participant_label only
#95
civier
opened
3 years ago
1
Is there GPU/CUDA support for eddy?
#94
finalelement
opened
3 years ago
9
FreeSurfer recon-all failure
#93
Lestropie
opened
3 years ago
0
0.5.1 hotfix
#92
Lestropie
closed
2 years ago
1
output-verbosity 3 and tractogram
#91
dkp
closed
2 years ago
13
Trouble with participant level
#90
dkp
closed
2 years ago
4
minor typo in documentation (participant1 instead of participant)
#89
dkp
closed
3 years ago
2
How do I run with a session?
#88
dkp
opened
3 years ago
1
Recipe updates
#87
Lestropie
closed
3 years ago
0
Fs to dev cherrypick
#86
Lestropie
closed
3 years ago
0
preproc: Use mtnormalise output for masking
#85
Lestropie
closed
3 years ago
0
dockerhub update?
#84
dkp
closed
3 years ago
3
participant: Modify ANTs MNI registration
#83
Lestropie
closed
3 years ago
0
Run eddy_squad
#82
Lestropie
closed
3 years ago
1
Pre-processing in the absence of reversed phase encoding data
#81
Lestropie
opened
3 years ago
7
Split analysis level outputs
#80
Lestropie
closed
3 years ago
0
Port to CircleCI 2.0
#79
Lestropie
closed
3 years ago
0
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