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bigomics
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playbase
Core back-end functionality and logic for OmicsPlayground
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Correct nb for ncol(X)<=6
#194
zitoa
opened
6 hours ago
0
Fix #1291: Data upload UMAP error
#193
ESCRI11
closed
8 hours ago
0
Fix tests
#192
ESCRI11
closed
10 hours ago
0
fix: make sure contrasts is new style
#191
ESCRI11
closed
1 day ago
0
fix RUV error on Lxgn data
#190
ivokwee
closed
1 week ago
1
Fix #1276: Sample information multiple errors
#189
ESCRI11
closed
1 week ago
0
add display_name (common name) column; remove non-used columns
#188
ivokwee
closed
1 week ago
0
fix-annotation-probetype-entrezid
#187
zitoa
closed
1 week ago
0
Error in `[.data.frame`(annot, , probe_type) : undefined columns selected
#186
zitoa
closed
4 days ago
0
Fix phenoclustering phenocorrelation
#185
zitoa
closed
1 week ago
0
dim(X) must have a positive length
#184
zitoa
closed
4 days ago
0
skip-DGE-test-in-presence-of-NA
#183
zitoa
closed
1 week ago
0
feat: "datasets like this will work now" (rows fully quoted)
#182
ESCRI11
closed
3 weeks ago
0
Fix #1256: Upload: attempt to use zero-length variable name (empty cols dataset)
#181
ESCRI11
closed
3 weeks ago
0
fix: check if creator is not null
#180
ESCRI11
closed
4 weeks ago
0
feat: check go genesets length
#179
ESCRI11
closed
1 month ago
1
Fix calculation of Fisher test for discrete vars if only 1 column
#178
zitoa
closed
1 month ago
0
wip-polishing-playbase-code
#177
zitoa
opened
1 month ago
0
Add drop=FALSE as good practice
#176
zitoa
closed
1 month ago
0
Retrieve chr map for mouse genes
#175
zitoa
closed
1 month ago
1
Fix #1219: Diff expression > Top features: factor level [3] is duplicated
#174
ESCRI11
closed
1 month ago
0
Fix #1218: Cluster > Samples: could not find function "pick_continuous_colors"
#173
ESCRI11
closed
1 month ago
0
Added drop=FALSE; Return pgx if no rows in gsetX.
#172
zitoa
closed
1 month ago
0
Added checks for DGE testing in presence of NA
#171
zitoa
opened
1 month ago
1
Added drop=FALSE as good practice
#170
zitoa
closed
1 month ago
0
Fix #1203: no rows to aggregate
#169
ESCRI11
closed
1 month ago
0
feat: send full err.mesg
#168
ESCRI11
closed
1 month ago
0
Fix #1175: Data upload:: Can't assign to the same column twice in the same query (duplicates detected)
#167
ESCRI11
closed
1 month ago
0
Dev pheno single
#166
ivokwee
closed
1 month ago
0
Fix #1190: WGCNA: non-numeric argument to mathematical function
#165
ESCRI11
closed
1 month ago
0
Fix perplexity issue if ncol(X)<=6; Added checks
#164
zitoa
closed
1 month ago
2
Fix #1161: use human ortholog to compute PCSF
#163
ESCRI11
closed
1 month ago
0
fix reactive labeltype.
#162
ivokwee
closed
1 month ago
0
Fix #1149: Heatmap crashes when K=1 (example-data)
#161
ESCRI11
closed
1 month ago
0
Fix #1139: spearman crashes on SA proteomics data (no remove of features without symbol)
#160
ESCRI11
closed
2 months ago
0
feat: move random gmt injection
#159
ESCRI11
closed
2 months ago
0
Fix #1136: Drug conn not computed for non human species
#158
ESCRI11
closed
2 months ago
0
Metabolomics probe detection
#157
ivokwee
closed
2 months ago
0
Fix #1131: Dataview > Sample info Error in apply: dim(X) must have a positive length
#156
ESCRI11
closed
2 months ago
0
improve read_counts and read.as_matrix speed.
#155
ivokwee
closed
2 months ago
0
improve handling of missing symbols
#154
ivokwee
closed
2 months ago
0
feat: labeltype for geneumap
#153
ESCRI11
closed
2 months ago
0
fix missing symbols if probetype does not match
#152
ivokwee
closed
2 months ago
0
fix: control no matches
#151
ESCRI11
closed
2 months ago
0
Improve annotation coverage
#150
ivokwee
closed
2 months ago
1
Missing annotation for 1.5% of mouse UNIPROT
#149
ivokwee
closed
2 months ago
1
fix missing annotation for UNIPROT mouse symbols
#148
ivokwee
closed
2 months ago
1
Collapse error: human ortholog is empty but not detected
#147
ESCRI11
closed
2 months ago
0
feat: better detection of empty columns
#146
ESCRI11
closed
2 months ago
0
Geneinfo error
#145
ESCRI11
closed
2 months ago
0
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