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bigomics
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Core back-end functionality and logic for OmicsPlayground
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Missing annotation for 1.5% of mouse UNIPROT
#149
ivokwee
closed
2 hours ago
1
fix missing annotation for UNIPROT mouse symbols
#148
ivokwee
closed
2 hours ago
1
Collapse error: human ortholog is empty but not detected
#147
ESCRI11
closed
1 day ago
0
feat: better detection of empty columns
#146
ESCRI11
closed
1 day ago
0
Geneinfo error
#145
ESCRI11
closed
1 day ago
0
fix: use union, not c
#144
ESCRI11
closed
5 days ago
0
Use omics color palette
#143
ESCRI11
closed
1 week ago
0
Fix read functions validation
#142
ivokwee
closed
1 week ago
0
Probe type detection for metabolomics
#141
mauromiguelm
closed
2 weeks ago
0
handle generalized features (no symbols)
#140
ESCRI11
closed
5 days ago
0
feat: new static volcano function
#139
ESCRI11
closed
2 weeks ago
0
test PR
#138
ivokwee
closed
2 weeks ago
0
Fix issue with `playbase::read_counts` not being able to read standard matrix
#137
mauromiguelm
closed
3 weeks ago
1
force remotes
#136
ESCRI11
closed
1 month ago
0
Add getMetaboliteInfo function
#135
mauromiguelm
closed
3 weeks ago
0
fix: clustering only gives one group.
#134
ivokwee
closed
1 month ago
0
Fix downsampler in top enriched plot for datasets low number of features
#133
mauromiguelm
closed
1 month ago
0
style: plotly hoverlabels
#132
ESCRI11
closed
1 month ago
0
Metabolomics in Omics Playground
#131
mauromiguelm
closed
1 month ago
1
feat: highlight in dark grey selected (but not significative) features
#130
ESCRI11
closed
1 month ago
0
Issue with detect_probetype for UNIPROT ID: "stable" branch
#129
zitoa
closed
4 weeks ago
0
Refactor dog scientific name in orthogene
#128
mauromiguelm
closed
2 months ago
0
detect_probetype now handles orgdb object directly
#127
mauromiguelm
closed
2 months ago
0
Adding new plotting function for quarto reporting
#126
ivokwee
closed
2 months ago
0
Refactor of normalization, outlier detection and imputation components
#125
mauromiguelm
closed
1 month ago
0
Remove special characters before converting count values to numeric
#124
mauromiguelm
closed
2 months ago
0
Refactor to allow probe type validation in pgx.checkINPUT
#123
mauromiguelm
closed
2 months ago
0
style: change default bar color
#122
ESCRI11
closed
2 months ago
0
Fix subscript out of bounds and incorrect length errors
#121
mauromiguelm
closed
2 months ago
0
fix: remove NA rows from gsva
#120
ESCRI11
closed
2 months ago
0
Fix gene set intersection and add custom geneset
#119
mauromiguelm
closed
2 months ago
0
Fix #972: Cell type profiling not working with mouse dataset
#118
ESCRI11
closed
2 months ago
0
Reduce RAM footprint
#117
ESCRI11
closed
3 months ago
2
Fix as.matrix conversion issue with integer64
#116
mauromiguelm
closed
3 months ago
0
Refactor gene annotation and remove deprecated functions
#115
mauromiguelm
closed
2 months ago
0
CRITICAL: Remove artifacts from xbioc probe type results
#114
mauromiguelm
closed
3 months ago
0
fix accnum-uniprot detection by counting symbols/genename
#113
ivokwee
closed
3 months ago
0
fix: sample all file to obtain decimal point character
#112
ESCRI11
closed
3 months ago
0
Refactor and add gene/geneset highlighting in volcano plots
#111
mauromiguelm
closed
3 months ago
0
feat: color up/down MA plot
#110
ESCRI11
closed
4 months ago
0
Replace BioMart by annotationhub for gene annotation
#109
mauromiguelm
closed
3 months ago
0
Feature: color up/down regulated features
#108
ESCRI11
closed
4 months ago
1
Remove unnecessary guess_organism check and dbg
#107
mauromiguelm
closed
4 months ago
1
Add log transformed check for counts
#106
mauromiguelm
closed
4 months ago
0
Improve handling of invalid comparison names
#105
mauromiguelm
closed
4 months ago
0
Fix drug sensitivity and activity computation
#104
mauromiguelm
closed
5 months ago
0
Contrasts invalid if group names (from contrast name) is not exact matching conditions
#103
ivokwee
closed
6 months ago
2
fix reading comma decimals
#102
ivokwee
closed
6 months ago
1
error message "more columns than column names" when uploading comma decimated counts
#101
ivokwee
closed
6 months ago
2
Fix issue with incorrect readout of large numbers by read.as_matrix [CRITICAL]
#100
mauromiguelm
closed
6 months ago
0
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