issues
search
bigomics
/
playbase
Core back-end functionality and logic for OmicsPlayground
Other
4
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
style: plotly hoverlabels
#132
ESCRI11
closed
3 months ago
0
Metabolomics in Omics Playground
#131
mauromiguelm
closed
2 months ago
1
feat: highlight in dark grey selected (but not significative) features
#130
ESCRI11
closed
3 months ago
0
Issue with detect_probetype for UNIPROT ID: "stable" branch
#129
zitoa
closed
2 months ago
0
Refactor dog scientific name in orthogene
#128
mauromiguelm
closed
3 months ago
0
detect_probetype now handles orgdb object directly
#127
mauromiguelm
closed
3 months ago
0
Adding new plotting function for quarto reporting
#126
ivokwee
closed
4 months ago
0
Refactor of normalization, outlier detection and imputation components
#125
mauromiguelm
closed
3 months ago
0
Remove special characters before converting count values to numeric
#124
mauromiguelm
closed
4 months ago
0
Refactor to allow probe type validation in pgx.checkINPUT
#123
mauromiguelm
closed
4 months ago
0
style: change default bar color
#122
ESCRI11
closed
4 months ago
0
Fix subscript out of bounds and incorrect length errors
#121
mauromiguelm
closed
4 months ago
0
fix: remove NA rows from gsva
#120
ESCRI11
closed
4 months ago
0
Fix gene set intersection and add custom geneset
#119
mauromiguelm
closed
4 months ago
0
Fix #972: Cell type profiling not working with mouse dataset
#118
ESCRI11
closed
4 months ago
0
Reduce RAM footprint
#117
ESCRI11
closed
4 months ago
2
Fix as.matrix conversion issue with integer64
#116
mauromiguelm
closed
4 months ago
0
Refactor gene annotation and remove deprecated functions
#115
mauromiguelm
closed
4 months ago
0
CRITICAL: Remove artifacts from xbioc probe type results
#114
mauromiguelm
closed
4 months ago
0
fix accnum-uniprot detection by counting symbols/genename
#113
ivokwee
closed
4 months ago
0
fix: sample all file to obtain decimal point character
#112
ESCRI11
closed
4 months ago
0
Refactor and add gene/geneset highlighting in volcano plots
#111
mauromiguelm
closed
5 months ago
0
feat: color up/down MA plot
#110
ESCRI11
closed
5 months ago
0
Replace BioMart by annotationhub for gene annotation
#109
mauromiguelm
closed
4 months ago
0
Feature: color up/down regulated features
#108
ESCRI11
closed
6 months ago
1
Remove unnecessary guess_organism check and dbg
#107
mauromiguelm
closed
6 months ago
1
Add log transformed check for counts
#106
mauromiguelm
closed
5 months ago
0
Improve handling of invalid comparison names
#105
mauromiguelm
closed
5 months ago
0
Fix drug sensitivity and activity computation
#104
mauromiguelm
closed
6 months ago
0
Contrasts invalid if group names (from contrast name) is not exact matching conditions
#103
ivokwee
closed
7 months ago
2
fix reading comma decimals
#102
ivokwee
closed
7 months ago
1
error message "more columns than column names" when uploading comma decimated counts
#101
ivokwee
closed
7 months ago
2
Fix issue with incorrect readout of large numbers by read.as_matrix [CRITICAL]
#100
mauromiguelm
closed
7 months ago
0
Add conditional check for annot parameter in pgx.splitHeatmapFromMatrix function
#99
mauromiguelm
closed
7 months ago
0
Fix #881: use same color palette as functional annotation
#98
ESCRI11
closed
8 months ago
0
fix: edge case not only trace length is equal to X
#97
ESCRI11
closed
8 months ago
0
Fix data frame conversion in pgx.createPGX function that introduced a drop phenotype
#96
mauromiguelm
closed
8 months ago
0
Fix pgx.custom_annotation limit and add custom annotation table
#95
mauromiguelm
closed
3 months ago
0
Update threshold for probe_type in guess_probetype function
#94
mauromiguelm
closed
8 months ago
0
remove TEST genesets
#93
ivokwee
closed
8 months ago
0
Fix filtering on genesets in pgx.add_GMT function
#92
mauromiguelm
closed
9 months ago
0
Refactor pgx.custom_annotation and remove hard 50% counts and annotation table match threshold
#91
mauromiguelm
closed
8 months ago
0
duplidated RDA datasets in playbase and playdata
#90
ivokwee
closed
4 months ago
0
GSETS not in sync with playdata
#89
ivokwee
closed
4 months ago
1
playbase::id2symbol() not working properly - many ENSG** unconverted
#88
zitoa
closed
9 months ago
2
Handle error e27, non-numeric values in counts file
#87
mauromiguelm
closed
9 months ago
0
GSVA consumes much RAM
#86
ivokwee
closed
4 months ago
1
Improve workflow and fix action exit 1 or 0 if action fails or succeeds
#85
mauromiguelm
closed
9 months ago
0
Dbg unitest action
#84
mauromiguelm
closed
9 months ago
0
Fix tests on playbase; add github action for test automation
#83
mauromiguelm
closed
9 months ago
0
Previous
Next