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biocore
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calour
exploratory and interactive microbiome analyses based on heatmaps
BSD 3-Clause "New" or "Revised" License
27
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22
forks
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add bargraph alternative to heatmap
#305
amnona
opened
1 month ago
0
Command history save and load
#304
amnona
opened
1 month ago
1
join_experiments() raises as pandas future warning
#303
amnona
opened
2 months ago
0
mRNA experiment support
#302
amnona
closed
2 months ago
2
add documentation for new functions/modules
#301
amnona
opened
2 months ago
0
Add permanova support
#300
amnona
opened
2 months ago
0
command history for save and load
#299
amnona
opened
2 months ago
0
Bugfix diff abundance
#298
amnona
closed
2 months ago
2
Diff abundance bug fix
#297
amnona
closed
2 months ago
0
Update INSTALL.md
#296
amnona
closed
3 months ago
0
Mpl37fix (#63)
#295
amnona
closed
3 months ago
1
No documentation for new version?
#294
DrJStrudwick
opened
4 months ago
0
New versions not on pypi?
#293
DrJStrudwick
opened
4 months ago
0
update installation instructions
#292
amnona
closed
3 months ago
1
working with small/negative values
#291
amnona
opened
4 months ago
0
filter_samples does not work with numpy array for value
#290
amnona
opened
4 months ago
0
Mpl37fix
#289
amnona
closed
6 months ago
0
use pandas data frame as metadata input
#288
baobabprince
opened
11 months ago
0
Struggling to Figure Out The Structure of Biom File
#287
hlee885
closed
12 months ago
1
Mpl37 plot fix and additional type hints for methods
#286
amnona
closed
1 year ago
0
add option to drop if exists the new column in join_metadata_fields()
#285
amnona
opened
1 year ago
0
when doing cluster_features for metaphlan output (shotgun metagenomics), need to set different presence threshold
#284
amnona
opened
1 year ago
0
filter_samples does not work when supplying values as a numpy array
#283
amnona
opened
1 year ago
0
missing documentation in the calour .io docs for to/from pandas
#282
amnona
opened
1 year ago
0
add type hints
#281
amnona
closed
6 months ago
0
enable sep=XX parameter in _read_metadata()
#280
amnona
closed
2 years ago
1
Update reporting to diff abundance and filtering
#279
amnona
closed
2 years ago
1
Better diff_abundance_enrichment() plot
#278
amnona
closed
2 years ago
1
add info after loading an experiment
#277
amnona
closed
2 years ago
4
remove normaliztion check warning from filter_by_data()
#276
amnona
closed
2 years ago
4
fix _read_metadata() to show as warning/info only the summary
#275
amnona
closed
2 years ago
1
fix heatmap() inplace colormap modification depracation warning
#274
amnona
closed
2 years ago
4
Bugfixes for manipulation.py
#273
amnona
closed
2 years ago
3
fix join_metadata() and version bump
#272
amnona
closed
2 years ago
1
get warning when doing "read_amplicon()"
#271
amnona
closed
2 years ago
0
set default (white) for missing colors in barx_colors in plot()
#270
amnona
opened
2 years ago
0
enable rotation for barx_label_kwargs in plot()
#269
amnona
opened
2 years ago
0
raise appropriate error when plotting an empty experiment
#268
amnona
opened
2 years ago
0
Installation problems
#267
baobabprince
opened
2 years ago
0
report number of samples and features after read()
#266
amnona
closed
2 years ago
0
Problem with rarifying unnormalized experiments
#265
amnona
opened
2 years ago
0
raise warning if value does not exist in diff_abundance
#264
amnona
opened
2 years ago
0
join_experiments() cannot work if experiment field already exists
#263
amnona
closed
2 years ago
0
filter_prevalence() field parameter not working
#262
amnona
opened
2 years ago
0
enable single value input in filter_by_metadata()
#261
amnona
opened
2 years ago
0
join_experiments need to set md5 data in the exp info
#260
amnona
closed
2 years ago
0
norm() for heatmap - maybe supply also a string option for "linear" or "log"
#259
amnona
opened
2 years ago
0
io.read() has the sep='\t' set so cannot re-set it in the sample_metadata_kwargs
#258
amnona
opened
2 years ago
0
warning for changing colormap for heatmap when doing plot()
#257
amnona
closed
2 years ago
0
feat: support https on the exported heatmap
#256
amnona
closed
3 years ago
1
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