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biocore
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tcga
Microbial analysis in TCGA data
BSD 3-Clause "New" or "Revised" License
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Decontamination analyses: the ‘most stringent filtering' list
#28
Yaooo999
opened
1 year ago
0
Pseudo-contaminants into the raw data
#27
Anaskou
closed
1 year ago
1
Which script can remove human sequence which contained in bam files?
#26
wanglu2014
closed
2 years ago
5
Do you recommend using BRACKEN after Kraken?
#25
wanglu2014
closed
2 years ago
2
Kraken TCGA microbial-detection pipeline
#24
nlawlor
closed
2 years ago
3
Data format request for ML
#23
helloxwm
opened
3 years ago
0
a question for PVCA
#22
daydayup-ly
closed
4 years ago
0
Some questions during VSNM
#21
helloxwm
closed
3 years ago
0
TCGA abbreviation and cancer type were wrong.
#20
yyoshiaki
closed
4 years ago
2
data format requirement
#19
leiwaaping
closed
4 years ago
2
Stefan's initial correlation analysis
#18
sjanssen2
opened
6 years ago
0
Kraken to fasta
#17
ekopylova
closed
6 years ago
0
Kraken to fasta
#16
ekopylova
closed
6 years ago
0
Merge pull request #1 from biocore/master
#15
ekopylova
closed
7 years ago
0
compute file stats
#14
ekopylova
closed
7 years ago
0
Kraken to fasta
#13
ekopylova
closed
7 years ago
0
bowtie build
#12
jkanbar
opened
7 years ago
0
move low quality genomes from input directory to output directory (fo…
#11
ekopylova
opened
7 years ago
3
Create cgc_bowtie2_build.py
#10
jkanbar
closed
7 years ago
2
script to generate RepoPhlAn quality genome list and associated taxon…
#9
ekopylova
opened
7 years ago
0
workflow logs
#8
ekopylova
opened
7 years ago
0
api script to create tcga workflow draft tasks
#7
ekopylova
closed
7 years ago
0
updated metadata file
#6
ekopylova
closed
7 years ago
0
api script to group BAM files and create draft tasks for BAM2FASTA
#5
ekopylova
closed
7 years ago
0
rename sample ids
#4
ekopylova
opened
8 years ago
0
Handover of all relevant scripts and files
#3
gregpoore
closed
8 years ago
0
Biom t
#2
ekopylova
closed
8 years ago
3
Directory structure and some pertinent files
#1
gregpoore
closed
8 years ago
6