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bioforensics
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MicroHapulator
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
https://microhapulator.readthedocs.io/
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Compress intermediate FASTQ files
#189
standage
closed
1 month ago
0
Compress intermediate sequence files
#188
standage
closed
1 month ago
0
Fix test
#187
standage
closed
2 months ago
0
New alerts in final report
#186
standage
closed
2 months ago
0
Mark gaps instead of discarding
#185
standage
closed
2 months ago
0
Additional warnings in report
#184
standage
closed
2 months ago
0
Mark gaps instead of skipping
#183
standage
closed
2 months ago
0
Replace BWA MEM with Minimap2
#182
standage
closed
2 months ago
0
Enable a portable report directory
#181
standage
closed
2 months ago
0
Report code refactor
#180
standage
closed
4 months ago
0
HTML report sub templates attempt 2
#179
agshumate
closed
5 months ago
1
HTML report sub templates
#178
agshumate
closed
5 months ago
0
Clean up mapping stats in report
#177
standage
closed
6 months ago
0
Make GRCh38 coordinates mandatory
#176
standage
closed
6 months ago
1
Streamlining HTML report code
#175
standage
closed
6 months ago
2
Change typing rate table to account for reads mapped to multiple markers at the same locus
#174
agshumate
closed
7 months ago
0
Minimum read length filter
#173
agshumate
closed
8 months ago
0
Sprucing up the report
#172
standage
closed
8 months ago
3
Number of typed reads exceeding number of mapped reads
#171
agshumate
closed
7 months ago
1
Suggested changes to filter-ambiguous
#170
standage
closed
8 months ago
2
Add MultiQC plots to report
#169
agshumate
closed
8 months ago
0
Replace donut plots with stacked bar graph
#168
standage
closed
8 months ago
4
Ridge plots for read length distributions
#167
agshumate
closed
8 months ago
8
InSilicoSeq verison 2.0
#166
agshumate
opened
9 months ago
0
Filter reads with too many Ns
#165
agshumate
closed
8 months ago
4
Add initial N-filtering step
#164
standage
closed
8 months ago
0
Repetitive read count fix
#163
agshumate
closed
10 months ago
1
Trying to fix repetitive read counts
#162
standage
closed
8 months ago
1
Add min length filter step after merging
#161
standage
closed
8 months ago
0
Improvements to QC visualizations in HTML report
#160
standage
closed
8 months ago
0
Updates for CI
#159
standage
closed
1 year ago
1
Support multiple marker definitions at a single locus
#158
standage
closed
1 year ago
0
Donut plots
#157
agshumate
closed
1 year ago
3
fixed numerical sorting on HTML report
#156
agshumate
closed
2 years ago
0
Type-rate asc-desc table filter for percentages are not behaving correctly
#155
danejo3
closed
2 years ago
3
Dev installation command line instruction has type-o and `importlib-metadata` incompatible version number
#154
danejo3
opened
2 years ago
2
Make off-target analysis optional
#153
standage
closed
2 years ago
0
Fix filter description in report
#152
standage
closed
2 years ago
0
Add callplots, clean up marker detail HTML
#151
standage
closed
2 years ago
0
removed base64 encoding for report
#150
agshumate
closed
2 years ago
0
Add haplotype call plots to marker detail
#149
standage
closed
2 years ago
0
Replace hard-coded filter thresholds in HTML report
#148
standage
closed
2 years ago
0
Implement single-end support for `mhpl8r pipe`
#147
standage
closed
2 years ago
0
Per marker report
#146
agshumate
closed
2 years ago
1
Perform variant calling at non-target positions
#145
standage
opened
2 years ago
2
Support single-end data in `mhpl8r pipe`
#144
standage
closed
2 years ago
0
Off target mapping
#143
agshumate
closed
2 years ago
1
Per-marker typing rate
#142
standage
closed
2 years ago
0
Improve QC for off-target alignments
#141
standage
closed
2 years ago
1
Conditional plotting of read length distributions vs. a summary table
#140
standage
closed
2 years ago
0
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